Last update 2024/12/25

2024

375) Mass spectrometry imaging of gamma-aminobutyric acid and glutamic acid decarboxylase reactions at various stages of banana ripening.

Ishimoto S, Fukusaki E, Shimma S.

J Biosci Bioeng. 2025 Jan;139(1):79-84. doi: 10.1016/j.jbiosc.2024.10.001. Epub 2024 Oct 31. 

PMID: 39482156

374) Characterization of fine-flavor cocoa in parent-hybrid combinations using metabolomics approach.

Afifah EN, Sari IA, Susilo AW, Malik A, Fukusaki E, Putri SP.

Food Chem X. 2024 Sep 12;24:101832. doi: 10.1016/j.fochx.2024.101832. eCollection 2024 Dec 30.

PMID: 39386152 

373) Effect of sodium metabisulfite treatment and storage condition on metabolic profile of young coconut (Cocos nucifera L.).

Rahmawati D, Adan MFY, Ikram MMM, Iman MN, Fukusaki E, Putri SP.

J Biosci Bioeng. 2024 Dec;138(6):515-521. doi: 10.1016/j.jbiosc.2024.08.002. Epub 2024 Sep 28.

PMID: 39343696

372) Novel sampling and gas-phase derivatization strategy: Proof-of-concept by profiling ionic polar metabolites using gas chromatography-mass spectrometry.

Kawamura K, Fukusaki E.

J Biosci Bioeng. 2024 Nov;138(5):462-468. doi: 10.1016/j.jbiosc.2024.07.019. Epub 2024 Sep 3.

PMID: 39232914

371) Periodontal tissue susceptibility to glycaemic control in type 2 diabetes.

Inoue M, Sakanaka A, Katakami N, Furuno M, Nishizawa H, Omori K, Taya N, Ishikawa A, Mayumi S, Tanaka Isomura E, Takeuchi H, Amano A, Shimomura I, Fukusaki E, Kuboniwa M.

Diabetes Obes Metab. 2024 Oct;26(10):4684-4693. doi: 10.1111/dom.15835. Epub 2024 Aug 14.

PMID: 39143658 

370) Novel mimetic tissue standards for precise quantitative mass spectrometry imaging of drug and neurotransmitter concentrations in rat brain tissues.

Watanabe K, Takayama S, Yamada T, Hashimoto M, Tadano J, Nakagawa T, Watanabe T, Fukusaki E, Miyawaki I, Shimma S.

Anal Bioanal Chem. 2024 Nov;416(26):5579-5593. doi: 10.1007/s00216-024-05477-5. Epub 2024 Aug 10.

PMID: 39126505  

369) New insights into the characteristic flavor components of traditional sour beers such as Lambic and Flanders Red Ale beers.

Onishi K, Furuno M, Mori A, Fukusaki E.

J Biosci Bioeng. 2024 Jul;138(1):54-62. doi: 10.1016/j.jbiosc.2024.04.002. Epub 2024 Apr 22.

PMID: 38653595 

368) Identification and enzymatic properties of arginine decarboxylase from Aspergillus oryzae.

Murakami Y, Ikuta S, Fukuda W, Akasaka N, Maruyama J-i, Shinma S, Fukusaki E, Fujiwara S.

Appl Environ Microbiol. 2024 Apr 16:e0029424. doi: 10.1128/aem.00294-24. Online ahead of print.

PMID: 38624200

367) Characteristics of kopyor coconut (Cocos nucifera L.) using sensory analysis and metabolomics-based approach.

Yunindanova MB, Putri SP, Novarianto H, Fukusaki E.

J Biosci Bioeng. 2024 Jul;138(1):44-53. doi: 10.1016/j.jbiosc.2024.02.008. Epub 2024 Apr 12.

PMID: 38614830 

366) A new type of sulfation reaction: C-sulfonation for α,β-unsaturated carbonyl groups by a novel sulfotransferase SULT7A1.

Kurogi K, Sakakibara Y, Hashiguchi T, Kakuta Y, Kanekiyo M, Teramoto T, Fukushima T, Bamba T, Matsumoto J, Fukusaki E, Kataoka H, Suiko M.

PNAS Nexus. 2024 Mar 4;3(3):pgae097. doi: 10.1093/pnasnexus/pgae097. eCollection 2024 Mar.

PMID: 38487162 

365) Multidisciplinary approach combining food metabolomics and epidemiology identifies meglutol as an important bioactive metabolite in tempe, an Indonesian fermented food.

Iman MN, Haslam DE, Liang L, Guo K, Joshipura K, Pérez CM, Clish C, Tucker KL, Manson JE, Bhupathiraju SN, Fukusaki E, Lasky-Su J, Putri SP.

Food Chem. 2024 Feb 16;446:138744. doi: 10.1016/j.foodchem.2024.138744. Online ahead of print.

PMID: 38432131

364) Rice grain structural characteristics of sake rice cultivar Hakutsurunishiki for daiginjo-shu brewing.

Tamada Y, Asai T, Kubodera T, Akashi T, Fukusaki E, Shimma S.

Biosci Biotechnol Biochem. 2024 Mar 22;88(4):445-452. doi: 10.1093/bbb/zbae002.

PMID: 38326278

363) Correlation between plasma glutamate and adiponectin in patients with type 2 diabetes.

Nagao H, Nishizawa H, Fukuda S, Fujishima Y, Kita S, Maeda N, Bamba T, Fukusaki E, Shimomura I.

Endocr J. 2024 Jan 29;71(1):55-63. doi: 10.1507/endocrj.EJ23-0506. Epub 2023 Nov 28.

PMID: 38030259 

2023

362) Identification of potential quality markers in Indonesia's Arabica specialty coffee using GC/MS-based metabolomics approach.

Amalia F, Irifune T, Takegami T, Yusianto, Sumirat U, Putri SP, Fukusaki E.

Metabolomics. 2023 Oct 25;19(11):90. doi: 10.1007/s11306-023-02051-5.

PMID: 37880543

361) Chitosan-based coating enriched with melezitose alters primary metabolites in fresh-cut pineapple during storage.

Malikul Ikram MM, Putri SP, Fukusaki E.

J Biosci Bioeng. 2023 Nov;136(5):374-382. doi: 10.1016/j.jbiosc.2023.08.002. Epub 2023 Sep 14.

PMID: 37689569 

360) Visualization of azoxystrobin penetration in wheat leaves using mass microscopy imaging.

Ikuta S, Fukusaki E, Shimma S.

J Pestic Sci. 2023 May 20;48(2):29-34. doi: 10.1584/jpestics.D22-063.

PMID: 37361488

359) Improvement of the functional value of green soybean (edamame) using germination and tempe fermentation: A comparative metabolomics study.

Iman MN, Irdiani R, Rahmawati D, Fukusaki E, Putri SP.

J Biosci Bioeng. 2023 Sep;136(3):205-212. doi: 10.1016/j.jbiosc.2023.05.012. Epub 2023 Jun 17.

PMID: 37331843 

358)Effects of n-butanol production on metabolism and the photosystem in Synecococcus elongatus PCC 7942 based on metabolic flux and target proteome analyses.

Wada K, Uebayashi K, Toya Y, Putri SP, Matsuda F, Fukusaki E, C Liao J, Shimizu H.

J Gen Appl Microbiol. 2024 Feb 2;69(4):185-195. doi: 10.2323/jgam.2023.03.002. Epub 2023 Mar 20.

PMID: 36935115 

357) Metabolite Changes in Indonesian Tempe Production from Raw Soybeans to Over-Fermented Tempe.

Prativi MBN, Astuti DI, Putri SP, Laviña WA, Fukusaki E, Aditiawati P.

Metabolites. 2023 Feb 17;13(2):300. doi: 10.3390/metabo13020300.

PMID: 36837919

2022

356) Salivary metabolic signatures of carotid atherosclerosis in patients with type 2 diabetes hospitalized for treatment.

Sakanaka A, Katakami N, Furuno M, Nishizawa H, Omori K, Taya N, Ishikawa A, Mayumi S, Inoue M, Tanaka Isomura E, Amano A, Shimomura I, Fukusaki E, Kuboniwa M.

Front Mol Biosci. 2022 Dec 21;9:1074285. doi: 10.3389/fmolb.2022.1074285. eCollection 2022.

PMID: 36619162 

355) Visualization of Glutamate Decarboxylase Activity in Barley Seeds under Salinity Stress Using Mass Microscope.

Ikuta S, Fukusaki E, Shimma S.

Metabolites. 2022 Dec 14;12(12):1262. doi: 10.3390/metabo12121262.

PMID: 36557299 

354) MALDI Mass Spectrometry Imaging Reveals the Existence of an N-Acyl-homoserine Lactone Quorum Sensing System in Pseudomonas putida Biofilms.

Pitchapa R, Dissook S, Putri SP, Fukusaki E, Shimma S.

Metabolites. 2022 Nov 21;12(11):1148. doi: 10.3390/metabo12111148.

PMID: 36422288 

353) Online measurement of the viscosity in shake flasks enables monitoring of γ-PGA production in depolymerase knockout mutants of Bacillus subtilis with the phosphate-starvation inducible promoter Ppst.

Hoffmann K, Halmschlag B, Briel S, Sieben M, Putri S, Fukusaki E, Blank LM, Büchs J.

Biotechnol Prog. 2023 Jan;39(1):e3293. doi: 10.1002/btpr.3293. Epub 2022 Sep 8. 

PMID: 36081345

352) Mass spectrometry imaging enables visualization of the localization of glutamate decarboxylase activity in germinating legume seeds.

Ikuta S, Shinohara N, Fukusaki E, Shimma S.

J Biosci Bioeng. 2022 Oct;134(4):356-361. doi: 10.1016/j.jbiosc.2022.07.008. Epub 2022 Aug 22

PMID: 36008275

351) Fusobacterium nucleatum Metabolically Integrates Commensals and Pathogens in Oral Biofilms.

Sakanaka A, Kuboniwa M, Shimma S, Alghamdi SA, Mayumi S, Lamont RJ, Fukusaki E, Amano A.

mSystems. 2022 Aug 30;7(4):e0017022. doi: 10.1128/msystems.00170-22. Epub 2022 Jul 19.

PMID: 35852319 

350)Metabolome analysis to investigate the effect of controlled fermentation on taste-related metabolites in terasi.

Sato A, Putri SP, Astuti DI, Fukusaki E.

Metabolomics. 2022 Jun 27;18(7):44. doi: 10.1007/s11306-022-01902-x.

PMID: 35760928

349)Investigation of the effect of processing on the component changes of single-origin chocolate during the bean-to-bar process.

Kitani Y, Putri SP, Fukusaki E.

J Biosci Bioeng. 2022 Aug;134(2):138-143. doi: 10.1016/j.jbiosc.2022.05.007. Epub 2022 Jun 23. 

PMID: 35753972

348) Unique metabolite profiles of Indonesian cocoa beans from different origins and their correlation with temperature.

Hanifah A, Firmanto H, Putri SP, Fukusaki E.

J Biosci Bioeng. 2022 Aug;134(2):125-132. doi: 10.1016/j.jbiosc.2022.05.001. Epub 2022 May 31. 

PMID: 35654674

347) Visualization of dipeptidyl peptidase B enzymatic reaction in rice koji using mass spectrometry imaging.

Wisman AP, Minami M, Tamada Y, Hirohata S, Gomi K, Fukusaki E, Shimma S.

J Biosci Bioeng. 2022 Aug;134(2):133-137. doi: 10.1016/j.jbiosc.2022.05.002. Epub 2022 May 25. 

PMID: 35643851

346) Metabolome analysis of banana (Musa acuminata) treated with chitosan coating and low temperature reveals different mechanisms modulating delayed ripening

AAR Parijadi, K Yamamoto, MMM Ikram, FM Dwivany, K Wikantika, ...

Frontiers in Sustainable Food Systems, 32

Published: 03 March 2022, doi: 10.3389/fsufs.2022.835978 

345) Structure-Based Non-targeted Mass Spectrometry Imaging Analysis of Dried Long Pepper (Piper longum)

AP Wisman, E Fukusaki, S Shimma

ACS Food Sci. Technol. 2022, 2, 5, 872–877

Publication Date:April 28, 2022

https://doi.org/10.1021/acsfoodscitech.2c00025

344) Metabolomics-Driven Identification of the Rate-Limiting Steps in 1-Propanol Production.

Ohtake T, Kawase N, Pontrelli S, Nitta K, Laviña WA, Shen CR, Putri SP, Liao JC, Fukusaki E.

Front Microbiol. 2022 Apr 14;13:871624. doi: 10.3389/fmicb.2022.871624. eCollection 2022.

PMID: 35495658 

343) Profiling volatile compounds from culture supernatants of periodontal bacteria using gas chromatography/mass spectrometry/olfactometry analysis with a monolithic silica gel adsorption device.

Mori A, Taniguchi M, Kuboniwa M, Amano A, Fukusaki E.

J Biosci Bioeng. 2022 Jul;134(1):77-83. doi: 10.1016/j.jbiosc.2022.04.002. Epub 2022 Apr 26. 

PMID: 35484014

342) Metabolomics approach to elucidate the importance of count size in commercial penaeid shrimps: white leg shrimp (Litopenaeus vannamei) and black tiger shrimp (Penaeusmonodon).

Putri SLE, Suantika G, Situmorang ML, Putri SP, Fukusaki E.

J Biosci Bioeng. 2022 May;133(5):459-466. doi: 10.1016/j.jbiosc.2022.01.010. Epub 2022 Mar 4.

PMID: 35256269 

341) Dynamic Changes in the Bacterial Community and Metabolic Profile during Fermentation of Low-Salt Shrimp Paste (Terasi).

Helmi H, Astuti DI, Putri SP, Sato A, Laviña WA, Fukusaki E, Aditiawati P.

Metabolites. 2022 Jan 26;12(2):118. doi: 10.3390/metabo12020118.

PMID: 35208193

340) Effects of Soaking Tempe in Vinegar on Metabolome and Sensory Profiles.

Dahlan HA, Nambu Y, Putri SP, Fukusaki E.

Metabolites. 2022 Jan 1;12(1):30. doi: 10.3390/metabo12010030.

PMID: 35050152

2021

339) Mass Spectrometry Imaging Reveals Localization of Secondary Metabolites in Red Yeast Rice Fermentation

Y Higa, M Minami, E Fukusaki, S Shimma

ACS Food Science & Technology 1 (10), 1814-1820

Publication Date:October 6, 2021

https://doi.org/10.1021/acsfoodscitech.1c00213

338) Characterization of five Indonesian mangoes using gas chromatography-mass spectrometry-based metabolic profiling and sensory evaluation.

Sato M, Ikram MMM, Pranamuda H, Agusta W, Putri SP, Fukusaki E.

J Biosci Bioeng. 2021 Dec;132(6):613-620. doi: 10.1016/j.jbiosc.2021.09.006. Epub 2021 Oct 13.

PMID: 34656425 

337) Metabolomic investigation of differences in components and taste between hon-mirin and mirin-like-seasoning.

Yamamoto K, Taniguchi M, Nakahara T, Ito Y, Sasano R, Fukusaki E.

J Biosci Bioeng. 2021 Dec;132(6):599-605. doi: 10.1016/j.jbiosc.2021.08.011. Epub 2021 Oct 2.

PMID: 34607774 

336) Comparative metabolomics and sensory evaluation of pineapple (Ananas comosus) reveal the importance of ripening stage compared to cultivar.

Ikram MMM, Mizuno R, Putri SP, Fukusaki E.

J Biosci Bioeng. 2021 Dec;132(6):592-598. doi: 10.1016/j.jbiosc.2021.08.008. Epub 2021 Sep 27. 

PMID: 34593317

335) Saliva and Plasma Reflect Metabolism Altered by Diabetes and Periodontitis.

Sakanaka A, Kuboniwa M, Katakami N, Furuno M, Nishizawa H, Omori K, Taya N, Ishikawa A, Mayumi S, Tanaka Isomura E, Shimomura I, Fukusaki E, Amano A.

Front Mol Biosci. 2021 Sep 13;8:742002. doi: 10.3389/fmolb.2021.742002. eCollection 2021.

PMID: 34589520

334) The ATP-hydrolyzing ectoenzyme E-NTPD8 attenuates colitis through modulation of P2X4 receptor-dependent metabolism in myeloid cells.

Tani H, Li B, Kusu T, Okumura R, Nishimura J, Okuzaki D, Motooka D, Arakawa S, Mori A, Yoshihara T, Ogino T, Tsai SH, Furuta Y, Muneta M, Nakamura S, Fukusaki E, Yamamoto K, Yagita H, Kayama H, Takeda K.

Proc Natl Acad Sci U S A. 2021 Sep 28;118(39):e2100594118. doi: 10.1073/pnas.2100594118.

PMID: 34548395

333) Gas chromatography-mass spectrometry-based metabolite profiling and sensory profile of Indonesian fermented food (tempe) from various legumes.

Rahmawati D, Astawan M, Putri SP, Fukusaki E.

J Biosci Bioeng. 2021 Nov;132(5):487-495. doi: 10.1016/j.jbiosc.2021.07.001. Epub 2021 Aug 28.

PMID: 34465490 

332) Gas chromatography/mass spectrometry-based metabolite profiling of coffee beans obtained from different altitudes and origins with various postharvest processing.

Amalia F, Aditiawati P, Yusianto, Putri SP, Fukusaki E.

Metabolomics. 2021 Jul 12;17(7):69. doi: 10.1007/s11306-021-01817-z.

331) Investigation of the characteristics of different shrimps by species and habitat using gas chromatography/mass spectrometry based metabolomics.

Ohto Y, Putri SP, Suantika G, Fukusaki E.

J Biosci Bioeng. 2021 Sep;132(3):258-264. doi: 10.1016/j.jbiosc.2021.04.008. Epub 2021 Jun 11.

PMID: 34127378 

330) Mass Spectrometric Enzyme Histochemistry for Choline Acetyltransferase Reveals De Novo Acetylcholine Synthesis in Rodent Brain and Spinal Cord.

Takeo E, Sugiura Y, Ohnishi Y, Kishima H, Fukusaki E, Shimma S.

ACS Chem Neurosci. 2021 Jun 16;12(12):2079-2087. doi: 10.1021/acschemneuro.0c00720. Epub 2021 Jun 2.

329) Evaluation of Change in Metabolome Caused by Comprehensive Diabetes Treatment: A Prospective Observational Study of Diabetes Inpatients with GC/MS-Based Non-Target Metabolomic Analysis.

Tay N, Katakami N, Omori K, Arakawa S, Hosoe S, Watanabe H, Takahara M, Miyashita K, Nishizawa H, Matsuoka TA, Furuno M, Bamba T, Iida J, Fukusaki E, Shimomura I.

J Diabetes Investig. 2021 Dec;12(12):2232-2241. doi: 10.1111/jdi.13600. Epub 2021 Jul 1.

PMID: 34032389 Free PMC article. 

328) Profiling of volatile compounds in Japanese sake stored in sherry casks using solid phase microextraction/gas chromatography/mass spectrometry analysis.

Taniguchi M, Furuno M, Yamada T, Kawamura K, Fukusaki E.

J Biosci Bioeng. 2021 Jul;132(1):108-112. doi: 10.1016/j.jbiosc.2021.03.014. Epub 2021 May 1.

327) Minimization of adverse effects of blank matrices from various apparatuses in the downsizing of gas chromatography-mass spectrometry-based metabolomics.

Arakawa S, Furuno M, Fukusaki E.

J Biosci Bioeng. 2021 Jul;132(1):102-107. doi: 10.1016/j.jbiosc.2021.03.005. Epub 2021 Apr 18.

326) Stable isotope and chemical inhibition analyses suggested the existence of a non-mevalonate-like pathway in the yeast Yarrowia lipolytica.

Dissook S, Kuzuyama T, Nishimoto Y, Kitani S, Putri S, Fukusaki E.

Sci Rep. 2021 Mar 10;11(1):5598. doi: 10.1038/s41598-021-85170-0.

325) Reduction of the extra-column band dispersion by a slow transport and splitting of a sample band in isocratic reversed-phase liquid chromatography.

Terada H, Kuroda I, Uzu H, Ohira M, Yoshikawa K, Furuno M, Fukusaki E, Tanaka N.

J Chromatogr A. 2021 Feb 13;1641:461996. doi: 10.1016/j.chroma.2021.461996. Online ahead of print.

324)1H-NMR metabolomics-based classification of Japanese sake and comparative metabolome analysis by gas chromatography-mass spectrometry.

Hayashi Y, Komatsu T, Iwashita K, Fukusaki E.

J Biosci Bioeng. 2021 May;131(5):557-564. doi: 10.1016/j.jbiosc.2020.12.008. Epub 2021 Feb 13.

 323) Investigation of the effects of actinorhodin biosynthetic gene cluster expression and a rpoB point mutation on the metabolome of Streptomyces coelicolor M1146.

Nitta K, Breitling R, Takano E, Putri SP, Fukusaki E.

J Biosci Bioeng. 2021 May;131(5):525-536. doi: 10.1016/j.jbiosc.2021.01.002. Epub 2021 Feb 3.

322) Shrimp count size: GC/MS-based metabolomics approach and quantitative descriptive analysis (QDA) reveal the importance of size in white leg shrimp (Litopenaeus vannamei).

Putri SLE, Suantika G, Situmorang ML, Christina J, Nikijuluw C, Putri SP, Fukusaki E.

Metabolomics. 2021 Jan 29;17(2):19. doi: 10.1007/s11306-020-01766-z.

2020

321) Metabolomic Analysis of Response to Nitrogen-Limiting Conditions in Yarrowia spp.

Dissook S, Putri SP, Fukusaki E.

Metabolites. 2020 Dec 29;11(1):E16. doi: 10.3390/metabo11010016.

320) Multi-Omics Analysis of the Effect of cAMP on Actinorhodin Production in Streptomyces coelicolor.

Nitta K, Carratore FD, Breitling R, Takano E, Putri SP, Fukusaki E.

Front Bioeng Biotechnol. 2020 Nov 5;8:595552. doi: 10.3389/fbioe.2020.595552. eCollection 2020.

319) Fake metabolomics chromatogram generation for facilitating deep learning of peak-picking neural networks.

Kanazawa S, Noda A, Ito A, Hashimoto K, Kunisawa A, Nakanishi T, Kajihara S, Mukai N, Iida J, Fukusaki E, Matsuda F.

J Biosci Bioeng. 2021 Feb;131(2):207-212. doi: 10.1016/j.jbiosc.2020.09.013. Epub 2020 Oct 10. 

318) Metabolomic analysis of fibrotic mice combined with public RNA-Seq human lung data reveal potential diagnostic biomarker candidates for lung fibrosis.

Nojima Y, Takeda Y, Maeda Y, Bamba T, Fukusaki E, Itoh MN, Mizuguchi K, Kumanogoh A.

FEBS Open Bio. 2020 Sep 22;10(11):2427-36. doi: 10.1002/2211-5463.12982. Online ahead of print.

317) Metabolic Visualization Reveals the Distinct Distribution of Sugars and Amino Acids in Rice Koji.

Putri Wisman A, Tamada Y, Hirohata S, Fukusaki E, Shimma S.

Mass Spectrom (Tokyo). 2020;9(1):A0089. doi: 10.5702/massspectrometry.A0089. Epub 2020 Aug 26.

316) Metabolomics-Based Study of the Effect of Raw Materials to the End Product of Tempe-An Indonesian Fermented Soybean.

Kadar AD, Astawan M, Putri SP, Fukusaki E.

Metabolites. 2020 Sep 11;10(9):367. doi: 10.3390/metabo10090367.

315) Mass Spectrometric Enzyme Histochemistry Method Developed for Visualizing In Situ Cholinesterase Activity in Mus musculus and Drosophila melanogaster.

Takeo E, Fukusaki E, Shimma S.

Anal Chem. 2020 Sep 15;92(18):12379-12386. doi: 10.1021/acs.analchem.0c02106. Epub 2020 Aug 31.

314) Serine racemase enhances growth of colorectal cancer by producing pyruvate from serine.

Ohshima K, Nojima S, Tahara S, Kurashige M, Kawasaki K, Hori Y, Taniguchi M, Umakoshi Y, Okuzaki D, Wada N, Ikeda JI, Fukusaki E, Morii E.

Nat Metab. 2020 Jan;2(1):81-96. doi: 10.1038/s42255-019-0156-2. Epub 2020 Jan 13.

313) Potato tuber metabolomics-based prediction of chip color quality and application using gas chromatography/flame ionization detector.

Fukuda T, Takamatsu K, Bamba T, Fukusaki E.

Biosci Biotechnol Biochem. 2020 Nov;84(11):2193-2198. doi: 10.1080/09168451.2020.1793656. Epub 2020 Jul 16.

312)Fast enantiomeric separation of amino acids using liquid chromatography/mass spectrometry on a chiral crown ether stationary phase.

Yoshikawa K, Furuno M, Tanaka N, Fukusaki E.

J Biosci Bioeng. 2020 Oct;130(4):437-442. doi: 10.1016/j.jbiosc.2020.05.007. Epub 2020 Jun 29.

311)Poly-γ-glutamic acid production by Bacillus subtilis 168 using glucose as the sole carbon source: A metabolomic analysis.

Halmschlag B, Putri SP, Fukusaki E, Blank LM.

J Biosci Bioeng. 2020 Sep;130(3):272-282. doi: 10.1016/j.jbiosc.2020.04.011. Epub 2020 Jun 13.

310) Plasma metabolites associated with arterial stiffness in patients with type 2 diabetes.

Katakami N, Omori K, Taya N, Arakawa S, Takahara M, Matsuoka TA, Tsugawa H, Furuno M, Bamba T, Fukusaki E, Shimomura I.

Cardiovasc Diabetol. 2020 Jun 11;19(1):75. doi: 10.1186/s12933-020-01057-w.

309) Metabolomics Analysis Reveals Global Metabolic Changes in the Evolved E. coli Strain with Improved Growth and 1-Butanol Production in Minimal Medium.

Laviña WA, Sakurai SSM, Pontrelli S, Putri SP, Fukusaki E.

Metabolites. 2020 May 13;10(5):192. doi: 10.3390/metabo10050192.

308) GC/MS-based metabolic profiling for the evaluation of solid state fermentation to improve quality of Arabica coffee beans.

Aditiawati P, Astuti DI, Kriswantoro JA, Khanza SM, Kamarisima, Irifune T, Amalia F, Fukusaki E, Putri SP.

Metabolomics. 2020 Apr 23;16(5):57. doi: 10.1007/s11306-020-01678-y.

307) Metabolite profiling of whiteleg shrimp Litopenaeus vannamei from super-intensive culture in closed aquaculture systems: a recirculating aquaculture system and a hybrid zero water discharge-recirculating aquaculture system.

Suantika G, Situmorang ML, Saputra FI, Putri SLE, Putri SP, Aditiawati P, Fukusaki E.

Metabolomics. 2020 Apr 10;16(4):49. doi: 10.1007/s11306-020-01675-1.

306) Profiling of taste-related compounds during the fermentation of Japanese sake brewed with or without a traditional seed mash (kimoto).

Taniguchi M, Takao Y, Kawasaki H, Yamada T, Fukusaki E.

J Biosci Bioeng. 2020 Jul;130(1):63-70. doi: 10.1016/j.jbiosc.2020.02.017. Epub 2020 Apr 4.

305) Component Profiling of Soy-Sauce-Like Seasoning Produced from Different Raw Materials.

Yamana T, Taniguchi M, Nakahara T, Ito Y, Okochi N, Putri SP, Fukusaki E.

Metabolites. 2020 Apr 1;10(4):137.

doi: 10.3390/metabo10040137.

304)GC-MS Based Metabolite Profiling to Monitor Ripening-Specific Metabolites in Pineapple (Ananas comosus).

Ikram MMM, Ridwani S, Putri SP, Fukusaki E.

Metabolites. 2020 Mar 31;10(4):134. doi: 10.3390/metabo10040134.

303) The depletion of ubiquilin in Drosophila melanogaster disturbs neurochemical regulation to drive activity and behavioral deficits.

Jantrapirom S, Enomoto Y, Karinchai J, Yamaguchi M, Yoshida H, Fukusaki E, Shimma S, Yamaguchi M.

Sci Rep. 2020 Mar 30;10(1):5689. doi: 10.1038/s41598-020-62520-y.

302) Dataset of Cavendish banana transcriptome in response to chitosan coating application.

Dwivany FM, Nugrahapraja H, Fukusaki E, Putri SP, Novianti C, Radjasa SK, Fauziah T, Nirmala Sari LD.

Data Brief. 2020 Feb 26;29:105337.

doi: https://doi.org/10.1016/j.dib.2020.105337 eCollection 2020 Apr.

301) Accumulation of sugars and nucleosides in response to high salt and butanol stress in 1-butanol producing Synechococcus elongatus.

Fathima AM, Laviña WA, Putri SP, Fukusaki E.

J Biosci Bioeng. 2020 Feb;129(2):177-183. doi: 10.1016/j.jbiosc.2019.08.015. Epub 2019 Sep 18.

300) Comparison of metabolic profiles of yeasts based on the difference of the Crabtree positive and negative.

Imura M, Nitta K, Iwakiri R, Matsuda F, Shimizu H, Fukusaki E.

J Biosci Bioeng. 2020 Jan;129(1):52-58. doi: 10.1016/j.jbiosc.2019.07.007. Epub 2019 Sep 16.

299) Identification of Key Metabolites in Poly-γ-Glutamic Acid Production by Tuning γ-PGA Synthetase Expression.

Halmschlag B, Putri SP, Fukusaki E, Blank LM.

Front Bioeng Biotechnol. 2020 Jan 30;8:38. doi: 10.3389/fbioe.2020.00038. eCollection 2020.

298) Comparison of Isomerase and Weimberg Pathway for γ-PGA Production From Xylose by Engineered Bacillus subtilis.

Halmschlag B, Hoffmann K, Hanke R, Putri SP, Fukusaki E, Büchs J, Blank LM.

Front Bioeng Biotechnol. 2020 Jan 21;7:476. doi: 10.3389/fbioe.2019.00476. eCollection 2019.

297) Suppression of lactate production by using sucrose as a carbon source in lactic acid bacteria.

Kawai M, Harada R, Yoda N, Yamasaki-Yashiki S, Fukusaki E, Katakura Y.

J Biosci Bioeng. 2020 Jan;129(1):47-51. doi: 10.1016/j.jbiosc.2019.06.017. Epub 2019 Jul 29.

296)Identification of Plasma Inositol and Indoxyl Sulfate as Novel Biomarker Candidates for Atherosclerosis in Patients with Type 2 Diabetes. -Findings from Metabolome Analysis Using GC/MS.

Omori K, Katakami N, Arakawa S, Yamamoto Y, Ninomiya H, Takahara M, Matsuoka TA, Tsugawa H, Furuno M, Bamba T, Fukusaki E, Shimomura I.

J Atheroscler Thromb. 2020 Oct 1;27(10):1053-1067. doi: 10.5551/jat.52506. Epub 2020 Jan 25.

295) Metabolomics approach for determining potential metabolites correlated with sensory attributes of Melaleuca cajuputi essential oil, a promising flavor ingredient

Siska Septiana, Nancy Dewi Yuliana, Boy Muchlis Bachtiar, Sastia Prama Putri, Eiichiro Fukusaki, Walter Alvarez Laviña, Christofora Hanny Wijaya

J Biosci Bioeng. 2020 May;129(5):581-587. Epub 2019 Dec 31.

https://doi.org/10.1016/j.jbiosc.2019.12.005

294) Mapping haze-komi on rice koji grains using β-glucuronidase expressing Aspergillus oryzae and mass spectrometry imaging

Adinda P Wisman, Yoshihiro Tamada, Shuji Hirohata, Katsuya Gomi, Eiichiro Fukusaki, Shuichi Shimma

Journal of Bioscience and Bioengineering, Volume 129, Issue 3, March 2020, Pages 296-301 (epub) (2019)

https://doi.org/10.1016/j.jbiosc.2019.09.016

2019

293) Automatic switching valve system to minimize variation of liquid chromatography-tandem mass spectrometry-based chiral amino acid profiling

Yutaka Umakoshi, Yosuke Nakano, Kosuke Fukuda, Kenichi Watanabe, Izuru Miyawaki, Eiichiro Fukusaki

Journal of bioscience and bioengineering 128 (6), 773-779 (2019)

https://doi.org/10.1016/j.jbiosc.2019.06.005

292) Online monitoring of the respiratory quotient reveals metabolic phases during microaerobic 2,3‐butanediol production with Bacillus licheniformis

Benedikt Heyman, Hannah Tulke, Sastia Prama Putri, Eiichiro Fukusaki, Jochen Büchs

Engineering in Life Sciences (2019), vol. 20, p133-144

https://doi.org/10.1002/elsc.201900121

291) HPLC fingerprinting coupled with linear discriminant analysis for the detection of adulteration in Orthosiphon aristatus

Elan Hernadi, Eti Rohaeti, Mohamad Rafi, Wulan Tri Wahyuni, Sastia Prama Putri, Eiichiro Fukusaki

Journal of Liquid Chromatography & Related Technologies 42 (15-16), 513-520 (2019)

https://doi.org/10.1080/10826076.2019.1629956

290) GC/MS based metabolite profiling of Indonesian specialty coffee from different species and geographical origin

Sastia Prama Putri, Tomoya Irifune, Eiichiro Fukusaki

Metabolomics 15 (10), 126 (2019)

https://doi.org/10.1007/s11306-019-1591-5

289) Tailor-made poly-γ-glutamic acid production

Birthe Halmschlag, Xenia Steurer, Sastia P Putri, Eiichiro Fukusaki, Lars M Blank

Metabolic engineering 55, 239-248 (2019)

https://doi.org/10.1016/j.ymben.2019.07.009

288) Gas chromatography-mass spectrometry metabolomics-based prediction of potato tuber sprouting during long-term storage

Tomohiko Fukuda, Kiyofumi Takamatsu, Takeshi Bamba, Eiichiro Fukusaki

Journal of bioscience and bioengineering 128 (2), 249-254 (2019)

https://doi.org/10.1016/j.jbiosc.2019.01.016

287) Tandem mass spectrometry imaging reveals distinct accumulation patterns of steroid structural isomers in human adrenal glands

Emi Takeo, Yuki Sugiura, Tatsuki Uemura, Koshiro Nishimoto, Masanori Yasuda, Eiji Sugiyama, Sumio Ohtsuki, Tatsuya Higashi, Tetsuo Nishikawa, Makoto Suematsu, Eiichiro Fukusaki, Shuichi Shimma

Analytical chemistry 91 (14), 8918-8925 (2019)

https://doi.org/10.1021/acs.analchem.9b00619

286) Development of a practical online supercritical fluid extraction–supercritical fluid chromatography/mass spectrometry system with an integrated split-flow method

Miho Sakai, Yoshihiro Hayakawa, Yasuhiro Funada, Takashi Ando, Eiichiro Fukusaki, Takeshi Bamba

Journal of Chromatography A 1592, 161-172 (2019)

https://doi.org/10.1016/j.chroma.2019.01.044

285) A metabolomics-based approach for the evaluation of off-tree ripening conditions and different postharvest treatments in mangosteen (Garcinia mangostana)

Anjaritha AR Parijadi, Sobir Ridwani, Fenny M Dwivany, Sastia P Putri, Eiichiro Fukusaki

Metabolomics 15 (5), 73 (2019)

https://doi.org/10.1007/s11306-019-1526-1

284) High-sensitive liquid chromatography-tandem mass spectrometry-based chiral metabolic profiling focusing on amino acids and related metabolites

Yosuke Nakano, Moyu Taniguchi, Eiichiro Fukusaki

Journal of bioscience and bioengineering 127 (4), 520-527 (2019)

https://doi.org/10.1016/j.jbiosc.2018.10.003

283) Metabolome analysis revealed the knockout of glyoxylate shunt as an effective strategy for improvement of 1-butanol production in transgenic Escherichia coli

Katsuaki Nitta, Walter A Laviña, Sammy Pontrelli, James C Liao, Sastia P Putri, Eiichiro Fukusaki

Journal of bioscience and bioengineering 127 (3), 301-308 (2019)

https://doi.org/10.1016/j.jbiosc.2018.08.013

282) Enantioselective Amino Acid Profile Improves Metabolomics-based Sensory Prediction of Japanese Sake

Moyu Taniguchi, Asako Shimotori, Eiichiro Fukusaki

Food Science and Technology Research 25 (6), 775-784 (2019)

https://doi.org/10.3136/fstr.25.775

281) Construction of a Prediction Model for Taste of Miso (Japanese Fermented Soybean Paste) Using Metabolic Profiling and Quantitative Descriptive Analyses

Takahiro Ogawa, Ken-Ichi Kusumoto, Eiichiro Fukusaki

Food Science and Technology Research 25 (6), 871-877 (2019)

https://doi.org/10.3136/fstr.25.871

280) Metabolomics-based profiling of three terminal alkene-producing Jeotgalicoccus spp. during different growth phase

Filemon Jalu Nusantara Putra, Sastia Prama Putri, Eiichiro Fukusaki

Journal of bioscience and bioengineering 127 (1), 52-58 (2019)

https://doi.org/10.1016/j.jbiosc.2018.06.014

2018

279) Free D-amino acids produced by commensal bacteria in the colonic lumen

Mitsuharu Matsumoto, Akihiro Kunisawa, Takanari Hattori, Shuichi Kawana, Yusuke Kitada, Hazuki Tamada, Shinichi Kawano, Yoshihiro Hayakawa, Junko Iida, Eiichiro Fukusaki

Scientific reports 8 (1), 1-7 (2018)

https://doi.org/10.1038/s41598-018-36244-z

278) Mechanistic study on the high-selectivity enantioseparation of amino acids using a chiral crown ether-bonded stationary phase and acidic, highly organic mobile phase by liquid chromatography/time-of-flight mass spectrometry.

Konya Y, Taniguchi M, Furuno M, Nakano Y, Tanaka N, Fukusaki E.

J Chromatogr A. 2018 Nov 30;1578:35-44. Epub 2018 Oct 9.

https://doi.org/10.1016/j.chroma.2018.10.004

277) Expression Analysis of 1-aminocyclopropane-1-carboxylic Acid Oxidase Genes in Chitosan-Coated Banana

K Yamamoto, A Amalia, SP Putri, E Fukusaki, FM Dwivany

HAYATI Journal of Biosciences 25 (1), 18-24

https://www.journalofbiosciences.org/content/25/1/18

276) Metabolic repair through emergence of new pathways in Escherichia coli.

Pontrelli S, Fricke RCB, Teoh ST, Laviña WA, Putri SP, Fitz-Gibbon S, Chung M, Pellegrini M, Fukusaki E, Liao JC.

Nat Chem Biol. 2018 Nov;14(11):1005-1009. Epub 2018 Oct 16.

https://doi.org/10.1038/s41589-018-0149-6

275) Directed strain evolution restructures metabolism for 1-butanol production in minimal media.

Pontrelli S, Fricke RCB, Sakurai SSM, Putri SP, Fitz-Gibbon S, Chung M, Wu HY, Chen YJ, Pellegrini M, Fukusaki E, Liao JC.

Metab Eng. 2018 Aug 11;49:153-163.

https://doi.org/10.1016/j.ymben.2018.08.004

274) Mass spectrometric imaging of GABA in the Drosophila melanogaster adult head.

Enomoto Y, An PN, Yamaguchi M, Fukusaki E, Shimma S.

Anal Sci. 2018 Sep 10;34(9):1055-1059. Epub 2018 Jul 27.

https://doi.org/10.2116/analsci.18SCN01

273) Highly Accurate Detection and Identification Methodology of Xenobiotic Metabolites Using Stable Isotope Labeling, Data Mining Techniques, and Time-Dependent Profiling Based on LC/HRMS/MS.

Takahashi M, Izumi Y, Iwahashi F, Nakayama Y, Iwakoshi M, Nakao M, Yamato S, Fukusaki E, Bamba T.

Anal Chem. 2018 Aug 7;90(15):9068-9076. Epub 2018 Jul 19.

https://doi.org/10.1021/acs.analchem.8b01388

272) Iterative cycle of widely targeted metabolic profiling for the improvement of 1-butanol titer and productivity in Synechococcus elongatus.

Fathima AM, Chuang D, Laviña WA, Liao J, Putri SP, Fukusaki E.

Biotechnol Biofuels. 2018 Jul 9;11:188. eCollection 2018.

https://doi.org/10.1186/s13068-018-1187-8

271) Identifying metabolic elements that contribute to productivity of 1-propanol bioproduction using metabolomic analysis

Sastia Prama Putri, Yasumune Nakayama, Claire Shen, Shingo Noguchi, Katsuaki Nitta, Takeshi Bamba, Sammy Pontrelli, James Liao, Eiichiro Fukusaki

Metabolomics , 2018, 14 (7), 96

https://doi.org/10.1007/s11306-018-1386-0

270) Development of a visualization method for imidacloprid in Drosophila melanogaster via imaging mass spectrometry.

Ohtsu S, Yamaguchi M, Nishiwaki H, Fukusaki E, Shimma S.

Anal Sci. 2018 Sep 10;34(9):991-996. Epub 2018 Jun 29.

https://doi.org/10.2116/analsci.18SCP04

269) Visualization of Asparaptine in Asparagus (Asparagus officinalis) using MALDI-IMS.

Miyoshi K, Enomoto Y, Fukusaki E, Shimma S.

Anal Sci. 2018 Sep 10;34(9):997-1001.Epub 2018 Jun 29.

https://doi.org/10.2116/analsci.18SCP03

268) Hypoxanthine Secretion from Human Adipose Tissue and its Increase in Hypoxia.

Nagao H, Nishizawa H, Tanaka Y, Fukata T, Mizushima T, Furuno M, Bamba T, Tsushima Y, Fujishima Y, Kita S, Funahashi T, Maeda N, Mori M, Fukusaki E, Shimomura I.

Obesity (Silver Spring). 2018 Jul;26(7):1168-1178. Epub 2018 Jun 7.

https://doi.org/10.1002/oby.22202

267) Gas chromatography coupled with mass spectrometry-based metabolomics for the classification of tempe from different regions and production processes in Indonesia.

Kadar AD, Aditiawati P, Astawan M, Putri SP, Fukusaki E.

J Biosci Bioeng. 2018 Sep;126(3):411-416. Epub 2018 Apr 27.

https://doi.org/10.1016/j.jbiosc.2018.03.020

266) Metabolomics approach to reduce the Crabtree effect in continuous culture of Saccharomyces cerevisiae.

Imura M, Iwakiri R, Bamba T, Fukusaki E.

J Biosci Bioeng. 2018 Aug;126(2):183-188. Epub 2018 Apr 22.

https://doi.org/10.1016/j.jbiosc.2018.02.008

265) Adiponectin/T-cadherin system enhances exosome biogenesis and decreases cellular ceramides by exosomal release.

Obata Y, Kita S, Koyama Y, Fukuda S, Takeda H, Takahashi M, Fujishima Y, Nagao H, Masuda S, Tanaka Y, Nakamura Y, Nishizawa H, Funahashi T, Ranscht B, Izumi Y, Bamba T, Fukusaki E, Hanayama R, Shimada S, Maeda N, Shimomura I.

JCI Insight. 2018 Apr 19;3(8). pii: 99680. 

10.1172/jci.insight.99680

264) Molecular Components of Arabidopsis Intact Vacuoles Clarified with Metabolomic and Proteomic Analyses.

Ohnishi M, Anegawa A, Sugiyama Y, Harada K, Oikawa A, Nakayama Y, Matsuda F, Nakamura Y, Sasaki R, Shichijo C, Hatcher PG, Fukaki H, Kanaya S, Aoki K, Yamazaki M, Fukusaki E, Saito K, Mimura T.

Plant Cell Physiol. 2018 Jul 1;59(7):1353-1362. 

https://doi.org/10.1093/pcp/pcy069

263) Microbe participation in aroma production during soy sauce fermentation.

Harada R, Yuzuki M, Ito K, Shiga K, Bamba T, Fukusaki E.

J Biosci Bioeng. 2018 Jun;125(6):688-694.

https://doi.org/10.1016/j.jbiosc.2017.12.004

262) Glutamate production from ammonia via glutamate dehydrogenase 2 activity supports cancer cell proliferation under glutamine depletion.

Takeuchi Y, Nakayama Y, Fukusaki E, Irino Y.

Biochem Biophys Res Commun. 2018 Jan 1;495(1):761-767. Epub 2017 Nov 14.

https://doi.org/10.1016/j.bbrc.2017.11.088

261) Metabolic profiling of Garcinia mangostana (mangosteen) based on ripening stages.

Parijadi AAR, Putri SP, Ridwani S, Dwivany FM, Fukusaki E.

J Biosci Bioeng. 2018 Feb;125(2):238-244. Epub 2017 Sep 29.

https://doi.org/10.1016/j.jbiosc.2017.08.013

260) Inhibition of Saccharomyces cerevisiae growth by simultaneous uptake of glucose and maltose.

Hatanaka H, Mitsunaga H, Fukusaki E.

J Biosci Bioeng. 2018 Jan;125(1):52-58. Epub 2017 Sep 15.

https://doi.org/10.1016/j.jbiosc.2017.07.013

2017

259) Development of a split-flow system for high precision variable sample introduction in supercritical fluid chromatography.

Sakai M, Hayakawa Y, Funada Y, Ando T, Fukusaki E, Bamba T.

J Chromatogr A. 2017 Sep 15;1515:218-231.Epub 2017 Jul 25.

https://doi.org/10.1016/j.chroma.2017.07.077

258) Solid-phase analytical derivatization for gas-chromatography-mass-spectrometry-based metabolomics.

Takeo E, Sasano R, Shimma S, Bamba T, Fukusaki E.

J Biosci Bioeng. 2017 Dec;124(6):700-706. Epub 2017 Aug 8.

https://doi.org/10.1016/j.jbiosc.2017.07.006

257) Epigenetic regulation of starvation-induced autophagy in Drosophila by histone methyltransferase G9a.

An PNT, Shimaji K, Tanaka R, Yoshida H, Kimura H, Fukusaki E, Yamaguchi M.

Sci Rep. 2017 Aug 4;7(1):7343.

https://doi.org/10.1038/s41598-017-07566-1

256) Investigation of poly(γ-glutamic acid) production via online determination of viscosity and oxygen transfer rate in shake flasks.

Regestein Née Meissner L, Arndt J, Palmen TG, Jestel T, Mitsunaga H, Fukusaki E, Büchs J.

J Biol Eng. 2017 Jul 12;11:23. eCollection 2017.

https://doi.org/10.1186/s13036-017-0065-4

255) Orthogonal partial least squares/projections to latent structures regression-based metabolomics approach for identification of gene targets for improvement of 1-butanol production in Escherichia coli.

Nitta K, Laviña WA, Pontrelli S, Liao JC, Putri SP, Fukusaki E.

J Biosci Bioeng. 2017 Nov;124(5):498-505. Epub 2017 Jun 29.

https://doi.org/10.1016/j.jbiosc.2017.05.015

254) Investigation of storage time-dependent alterations of enantioselective amino acid profiles in kimchi using liquid chromatography-time of flight mass spectrometry.

Taniguchi M, Konya Y, Nakano Y, Fukusaki E.

J Biosci Bioeng. 2017 Oct;124(4):414-418. Epub 2017 May 27.

https://doi.org/10.1016/j.jbiosc.2017.04.019

253) Integrated strategy for unknown EI-MS identification using quality control calibration curve, multivariate analysis, EI-MS spectral database, and retention index prediction.

Matsuo T, Tsugawa H, Miyagawa H, Fukusaki E.

Anal Chem. 2017 Jun 20;89(12):6766-6773. Epub 2017 May 26.

https://doi.org/10.1021/acs.analchem.7b01010

252) Metabolomics-driven approach to solving a CoA imbalance for improved 1-butanol production in Escherichia coli.Ohtake T, Pontrelli S, Laviña WA, Liao JC, Putri SP, Fukusaki E.

Metab Eng. 2017 May;41:135-143. Epub 2017 Apr 8.

https://doi.org/10.1016/j.ymben.2017.04.003

251)Metabolic profiling of Drosophila melanogaster metamorphosis: a new insight into the central metabolic pathways

PNT An, M Yamaguchi, E Fukusaki

Metabolomics 13 (3), 29 2017 Mar 1

https://doi.org/10.1007/s11306-017-1167-1

250) Wide target analysis of acylglycerols in miso (Japanese fermented soybean paste) by supercritical fluid chromatography coupled with triple quadrupole mass spectrometry and the analysis of the correlation between taste and both acylglycerols and free fatty acids.

Ogawa T, Izumi Y, Kusumoto K, Fukusaki E, Bamba T.

Rapid Commun Mass Spectrom. 2017 Jun 15;31(11):928-936.

https://doi.org/10.1002/rcm.7862

249) Distinct signatures of dental plaque metabolic byproducts dictated by periodontal inflammatory status.

Sakanaka A, Kuboniwa M, Hashino E, Bamba T, Fukusaki E, Amano A.

Sci Rep. 2017 Feb 21;7:42818.

https://doi.org/10.1038/srep42818

248) Effect of Furan Fatty Acids and 3-Methyl-2,4-Nonanedione on Light-Induced Off-Odor in Soybean Oil.

Sano T, Okabe R, Iwahashi M, Imagi J, Sato T, Yamashita T, Fukusaki E, Bamba T.

J Agric Food Chem. 2017 Mar 15;65(10):2136-2140. Epub 2017 Feb 28.

https://doi.org/10.1021/acs.jafc.6b05056

247) Increased Dynamics of Tricarboxylic Acid Cycle and Glutamate Synthesis in Obese Adipose Tissue: In vivo Metabolic Turnover Analysis.Nagao H, Nishizawa H, Bamba T, Nakayama Y, Isozumi N, Nagamori S, Kanai Y, Tanaka Y, Kita S, Fukuda S, Funahashi T, Maeda N, Fukusaki E, Shimomura I.

J Biol Chem. 2017 Mar 17;292(11):4469-4483. Epub 2017 Jan 24.

10.1074/jbc.M116.770172

246) Lipoprotein profiling methodology based on determination of apolipoprotein concentration.

Takeda H, Izumi Y, Tomita A, Koike T, Shiomi M, Fukusaki E, Matsuda F, Bamba T.

Bioanalysis. 2017 Jan;9(1):9-19.

https://doi.org/10.4155/bio-2016-0234

245) Simultaneous profiling of 17 steroid hormones for the evaluation of endocrine-disrupting chemicals in H295R cells.

Jumhawan U, Yamashita T, Ishida K, Fukusaki E, Bamba T.

Bioanalysis. 2017 Jan;9(1):67-69.

https://doi.org/10.4155/bio-2016-0149

244) Influence of yeast and lactic acid bacterium on the constituent profile of soy sauce during fermentation.

Harada R, Yuzuki M, Ito K, Shiga K, Bamba T, Fukusaki E.

J Biosci Bioeng. 2017 Feb;123(2):203-208. Epub 2016 Dec 7.

https://doi.org/10.1016/j.jbiosc.2016.08.010

243) Novel high-throughput and widely-targeted liquid chromatography-time of flight mass spectrometry method for D-amino acids in foods.

Konya Y, Taniguchi M, Fukusaki E.

J Biosci Bioeng. 2017 Jan;123(1):126-133. Epub 2016 Sep 17.

https://doi.org/10.1016/j.jbiosc.2016.07.009

242) Metabolic engineering for isopropanol production by an engineered cyanobacterium, Synechococcus elongatus PCC 7942, under photosynthetic conditions.

Hirokawa Y, Dempo Y, Fukusaki E, Hanai T.

J Biosci Bioeng. 2017 Jan;123(1):39-45.

https://doi.org/10.1016/j.jbiosc.2016.07.005

241) Quality evaluation of green tea leaf cultured under artificial light condition using gas chromatography/mass spectrometry.

Miyauchi S, Yonetani T, Yuki T, Tomio A, Bamba T, Fukusaki E.

J Biosci Bioeng. 2017 Feb;123(2):197-202.

https://doi.org/10.1016/j.jbiosc.2016.07.017

40) Development of a liquid chromatography-tandem mass spectrometry method for quantitative analysis of trace D-amino acids.

Nakano Y, Konya Y, Taniguchi M, Fukusaki E.

J Biosci Bioeng. 2017 Jan;123(1):134-138.

https://doi.org/10.1016/j.jbiosc.2016.07.008

2016

239) Two isoforms of TALDO1 generated by alternative translational initiation show differential nucleocytoplasmic distribution to regulate the global metabolic network.

Moriyama T, Tanaka S, Nakayama Y, Fukumoto M, Tsujimura K, Yamada K, Bamba T, Yoneda Y, Fukusaki E, Oka M.

Sci Rep. 2016 Oct 5;6:34648.

https://doi.org/10.1038/srep34648

238) Prediction of Periodontal Inflammation via Metabolic Profiling of Saliva.

Kuboniwa M, Sakanaka A, Hashino E, Bamba T, Fukusaki E, Amano A.

J Dent Res. 2016 Nov;95(12):1381-1386.

https://doi.org/10.1177/0022034516661142

237) Branched chain amino acids maintain the molecular weight of poly(γ-glutamic acid) of Bacillus licheniformis ATCC 9945 during the fermentation.

Mitsunaga H, Meissner L, Büchs J, Fukusaki E.

J Biosci Bioeng. 2016 Oct;122(4):400-5. Epub 2016 May 18.

https://doi.org/10.1016/j.jbiosc.2016.03.007

236) A High Phosphorus Diet Affects Lipid Metabolism in Rat Liver: A DNA Microarray Analysis.

Chun S, Bamba T, Suyama T, Ishijima T, Fukusaki E, Abe K, Nakai Y.

PLoS One. 2016 May 17;11(5):e0155386. eCollection 2016.

https://doi.org/10.1371/journal.pone.0155386

235) Relationship between 3-Methyl-2,4-nonanedione Concentration and Intensity of Light-induced Off-odor in Soy Bean Oil.

Sano T, Iwahashi M, Imagi J, Sato T, Yamashita T, Fukusaki E, Bamba T.

J Oleo Sci. 2016 May 1;65(5):447-50. Epub 2016 Apr 15.

https://doi.org/10.5650/jos.ess15233

234) In vitro steroid profiling system for the evaluation of endocrine disruptors.

Nakano Y, Yamashita T, Okuno M, Fukusaki E, Bamba T.

J Biosci Bioeng. 2016 Sep;122(3):370-7. Epub 2016 Mar 12.

https://doi.org/10.1016/j.jbiosc.2016.02.008

233) Random Sample Consensus combined with Partial Least Squares regression (RANSAC-PLS) for microbial metabolomics data mining and phenotype improvement.

Teoh ST, Kitamura M, Nakayama Y, Putri S, Mukai Y, Fukusaki E.

J Biosci Bioeng. 2016 Aug;122(2):168-75. Epub 2016 Feb 6.

https://doi.org/10.1016/j.jbiosc.2016.01.007

232) Insights into the formation mechanism of chloropropanol fatty acid esters under laboratory-scale deodorization conditions.

Hori K, Hori-Koriyama N, Tsumura K, Fukusaki E, Bamba T.

J Biosci Bioeng. 2016 Aug;122(2):246-51. Epub 2016 Jan 25.

https://doi.org/10.1016/j.jbiosc.2015.12.018

231) Method for the Compound Annotation of Conjugates in Nontargeted Metabolomics Using Accurate Mass Spectrometry, Multistage Product Ion Spectra and Compound Database Searching.

Ogura T, Bamba T, Tai A, Fukusaki E.

Mass Spectrom (Tokyo). 2015;4(1):A0036. Epub 2015 Mar 26.

10.5702/massspectrometry.A0036

230) Quantification of coffee blends for authentication of Asian palm civet coffee (Kopi Luwak) via metabolomics: A proof of concept.

Jumhawan U, Putri SP, Yusianto, Bamba T, Fukusaki E.

J Biosci Bioeng. 2016 Jul;122(1):79-84. Epub 2016 Jan 6.

https://doi.org/10.1016/j.jbiosc.2015.12.008

229) Quantitative target analysis and kinetic profiling of acyl-CoAs reveal the rate-limiting step in cyanobacterial 1-butanol production.

Noguchi S, Putri SP, Lan EI, Laviña WA, Dempo Y, Bamba T, Liao JC, Fukusaki E.

Metabolomics. 2016;12:26. Epub 2016 Jan 4.

10.1007/s11306-015-0940-2

2015

228) A particular silent codon exchange in a recombinant gene greatly influences host cell metabolic activity.

Rahmen N, Schlupp CD, Mitsunaga H, Fulton A, Aryani T, Esch L, Schaffrath U, Fukuzaki E, Jaeger KE, Büchs J.

Microb Cell Fact. 2015 Oct 5;14(1):156.

https://doi.org/10.1186/s12934-015-0348-8

227) Metabolome analysis reveals the effect of carbon catabolite control on the poly(γ-glutamic acid) biosynthesis of Bacillus licheniformis ATCC 9945.

Mitsunaga H, Meissner L, Palmen T, Bamba T, Büchs J, Fukusaki E.

J Biosci Bioeng. 2016 Apr;121(4):413-9. Epub 2015 Sep 26.

https://doi.org/10.1016/j.jbiosc.2015.08.012

226) Profiling of volatile compounds in APCMin/+ mice blood by dynamic headspace extraction and gas chromatography/mass spectrometry.

Kakuta S, Nishiumi S, Yoshida M, Fukusaki E, Bamba T.

J Chromatogr B Analyt Technol Biomed Life Sci. 2015 Oct 15;1003:35-40. Epub 2015 Sep 11.

https://doi.org/10.1016/j.jchromb.2015.09.002

225) A metabolomics-based strategy for identification of gene targets for phenotype improvement and its application to 1-butanol tolerance in Saccharomyces cerevisiae.

Teoh ST, Putri S, Mukai Y, Bamba T, Fukusaki E.

Biotechnol Biofuels. 2015 Sep 15;8:144. eCollection 2015.

https://doi.org/10.1186/s13068-015-0330-z

224) Metabolomic approach for improving ethanol stress tolerance in Saccharomyces cerevisiae.

Ohta E, Nakayama Y, Mukai Y, Bamba T, Fukusaki E.

J Biosci Bioeng. 2016 Apr;121(4):399-405. Epub 2015 Sep 3.

https://doi.org/10.1016/j.jbiosc.2015.08.006

223) Extra-facile chiral separation of amino acid enantiomers by LC-TOFMS analysis.

Konya Y, Bamba T, Fukusaki E.

J Biosci Bioeng. 2016 Mar;121(3):349-53. Epub 2015 Aug 28.

https://doi.org/10.1016/j.jbiosc.2015.06.017

222) Lipidomic analysis of plasma lipoprotein fractions in myocardial infarction-prone rabbits.

Takeda H, Koike T, Izumi Y, Yamada T, Yoshida M, Shiomi M, Fukusaki E, Bamba T.

J Biosci Bioeng. 2015 Oct;120(4):476-82. Epub 2015 Jul 8.

https://doi.org/10.1016/j.jbiosc.2015.02.015

221) Influence of nitrogen source and pH value on undesired poly(γ-glutamic acid) formation of a protease producing Bacillus licheniformis strain.

Meissner L, Kauffmann K, Wengeler T, Mitsunaga H, Fukusaki E, Büchs J.

J Ind Microbiol Biotechnol. 2015 Sep;42(9):1203-15. Epub 2015 Jul 8.

https://doi.org/10.1007/s10295-015-1640-7

220) New Insight into the Role of the Calvin Cycle: Reutilization of CO2 Emitted through Sugar Degradation.

Shimizu R, Dempo Y, Nakayama Y, Nakamura S, Bamba T, Fukusaki E, Fukui T.

Sci Rep. 2015 Jul 1;5:11617.

https://doi.org/10.1038/srep11617

219) Application of gas chromatography/flame ionization detector-based metabolite fingerprinting for authentication of Asian palm civet coffee (Kopi Luwak).

Jumhawan U, Putri SP, Yusianto, Bamba T, Fukusaki E.

J Biosci Bioeng. 2015 Nov;120(5):555-61. Epub 2015 Apr 23.

https://doi.org/10.1016/j.jbiosc.2015.03.005

218) Planteose as a storage carbohydrate required for early stage of germination of Orobanche minor and its metabolism as a possible target for selective control.

Wakabayashi T, Joseph B, Yasumoto S, Akashi T, Aoki T, Harada K, Muranaka S, Bamba T, Fukusaki E, Takeuchi Y, Yoneyama K, Muranaka T, Sugimoto Y, Okazawa A.

J Exp Bot. 2015 Jun;66(11):3085-97. Epub 2015 Mar 28.

https://doi.org/10.1093/jxb/erv116

217) MRM-DIFF: data processing strategy for differential analysis in large scale MRM-based lipidomics studies.

Tsugawa H, Ohta E, Izumi Y, Ogiwara A, Yukihira D, Bamba T, Fukusaki E, Arita M.

Front Genet. 2015 Jan 30;5:471. eCollection 2014.

https://doi.org/10.3389/fgene.2014.00471

216) Multi-Component Profiling of Trace Volatiles in Blood by Gas Chromatography/Mass Spectrometry with Dynamic Headspace Extraction

S Kakuta, T Yamashita, S Nishiumi, M Yoshida, E Fukusaki, T Bamba

Mass Spectrom (Tokyo). 2015;4(1):A0034. Epub 2015 Jan 15.

https://doi.org/10.5702/massspectrometry.A0034

215) Lansioside D, a new triterpenoid glycoside antibiotic from the fruit peel of Lansium domesticum Correa

EC Marfori, SI Kajiyama, EI Fukusaki, A Kobayashi

Journal of Pharmacognosy and Phytochemistry 3 (5), 140-143

214) High-Throughput Simultaneous Analysis of Pesticides by Supercritical Fluid Chromatography Coupled with High-Resolution Mass Spectrometry.

Ishibashi M, Izumi Y, Sakai M, Ando T, Fukusaki E, Bamba T.

J Agric Food Chem. 2015 May 13;63(18):4457-63. Epub 2015 Jan 16.

https://doi.org/10.1021/jf5056248

213) Bulk RNA degradation by nitrogen starvation-induced autophagy in yeast.

Huang H, Kawamata T, Horie T, Tsugawa H, Nakayama Y, Ohsumi Y, Fukusaki E.

EMBO J. 2015 Jan 14;34(2):154-68. Epub 2014 Dec 2.

https://doi.org/10.15252/embj.201489083

2014

212) Determination of niacin and its metabolites using supercritical fluid chromatography coupled to tandem mass spectrometry.

Taguchi K, Fukusaki E, Bamba T.

Mass Spectrom (Tokyo). 2014;3(1):A0029. Epub 2014 Aug 1.

10.5702/massspectrometry.A0029

211) Glutamate Acts as a Key Signal Linking Glucose Metabolism to Incretin/cAMP Action to Amplify Insulin Secretion.

Gheni G, Ogura M, Iwasaki M, Yokoi N, Minami K, Nakayama Y, Harada K, Hastoy B, Wu X, Takahashi H, Kimura K, Matsubara T, Hoshikawa R, Hatano N, Sugawara K, Shibasaki T, Inagaki N, Bamba T, Mizoguchi A, Fukusaki E, Rorsman P, Seino S.

Cell Rep. 2014 Oct 23;9(2):661-73. Epub 2014 Oct 16.

https://doi.org/10.1016/j.celrep.2014.09.030

210) Changes in transcription and metabolism during the early stage of replicative cellular senescence in budding yeast.

Kamei Y, Tamada Y, Nakayama Y, Fukusaki E, Mukai Y.

J Biol Chem. 2014 Nov 14;289(46):32081-93. doi: 10.1074/jbc.M114.600528. Epub 2014 Oct 7.

doi: 10.1074/jbc.M114.600528

209) Novel strategy for non-targeted isotope-assisted metabolomics by means of metabolic turnover and multivariate analysis.

Nakayama Y, Tamada Y, Tsugawa H, Bamba T, Fukusaki E.

Metabolites. 2014 Aug 25;4(3):722-39. doi: 10.3390/metabo4030722.

doi: 10.3390/metabo4030722

208) Simultaneous analysis for water- and fat-soluble vitamins by a novel single chromatography technique unifying supercritical fluid chromatography and liquid chromatography.

Taguchi K, Fukusaki E, Bamba T.

J Chromatogr A. 2014 Oct 3;1362:270-7. doi: 10.1016/j.chroma.2014.08.003. Epub 2014 Aug 12.

https://doi.org/10.1016/j.chroma.2014.08.003

207) Supercritical fluid extraction as a preparation method for mass spectrometry of dried blood spots.

Matsubara A, Izumi Y, Nishiumi S, Suzuki M, Azuma T, Fukusaki E, Bamba T, Yoshida M.

J Chromatogr B Analyt Technol Biomed Life Sci. 2014 Aug 17;969C:199-204. doi: 10.1016/j.jchromb.2014.08.013. [Epub ahead of print]

https://doi.org/10.1016/j.jchromb.2014.08.013

206) Metabolome Analysis of Drosophila melanogaster during Embryogenesis.

An PN, Yamaguchi M, Bamba T, Fukusaki E.

PLoS One. 2014 Aug 14;9(8):e99519. doi: 10.1371/journal.pone.0099519. eCollection 2014.

https://doi.org/10.1371/journal.pone.0099519

205) Gas chromatography/mass spectrometry based component profiling and quality prediction for Japanese sake.

Mimura N, Isogai A, Iwashita K, Bamba T, Fukusaki E.

J Biosci Bioeng. 2014 Oct;118(4):406-14. doi: 10.1016/j.jbiosc.2014.04.006. Epub 2014 Jul 22.

https://doi.org/10.1016/j.jbiosc.2014.04.006

204) Drosophila Sirt2/mammalian SIRT3 deacetylates ATP synthase β and regulates complex V activity.

Rahman M, Nirala NK, Singh A, Zhu LJ, Taguchi K, Bamba T, Fukusaki E, Shaw LM, Lambright DG, Acharya JK, Acharya UR.

J Cell Biol. 2014 Jul 21;206(2):289-305. doi: 10.1083/jcb.201404118. Epub 2014 Jul 14.

https://doi.org/10.1083/jcb.201404118

203) Metabolic profiling of retrograde pathway transcription factors rtg1 and rtg3 knockout yeast.

Hashim Z, Mukai Y, Bamba T, Fukusaki E.

Metabolites. 2014 Jul 8;4(3):580-98. doi: 10.3390/metabo4030580.

https://doi.org/10.3390/metabo4030580

202) Construction of a metabolome library for transcription factor-related single gene mutants of Saccharomyces cerevisiae.Hashim Z, Teoh ST, Bamba T, Fukusaki E.

J Chromatogr B Analyt Technol Biomed Life Sci. 2014 Sep 1;966:83-92. doi: 10.1016/j.jchromb.2014.05.041. Epub 2014 May 27.

https://doi.org/10.1016/j.jchromb.2014.05.041

201) Molar-based targeted metabolic profiling of cyanobacterial strains with potential for biological production.

Dempo Y, Ohta E, Nakayama Y, Bamba T, Fukusaki E.

Metabolites. 2014 Jun 20;4(2):499-516. doi: 10.3390/metabo4020499.

https://doi.org/10.3390/metabo4020499

200) Metabolic Profiling Approach to Explore the Compounds Related to the Umami of Soy Sauce.

Shiga K, Yamamoto S, Nakajima A, Kodama Y, Imamura M, Sato T, Uchida R, Obata A, Bamba T,Fukusaki E.

J Agric Food Chem. 2014 Jul 23;62(29):7317-22.

https://doi.org/10.1021/jf501173r

199) High-quality green tea leaf production by artificial cultivation under growth chamber conditions considering amino acids profile.

Miyauchi S, Yuki T, Fuji H, Kojima K, Yonetani T, Tomio A, Bamba T, Fukusaki E.

J Biosci Bioeng. 2014 Dec;118(6):710-5. doi: 10.1016/j.jbiosc.2014.05.008. Epub 2014 Jun 7.

https://doi.org/10.1016/j.jbiosc.2014.05.008

198) Metabolic distance estimation based on principle component analysis of metabolic turnover.

Nakayama Y, Putri SP, Bamba T, Fukusaki E.

J Biosci Bioeng. 2014 Sep;118(3):350-5. doi: 10.1016/j.jbiosc.2014.02.014. Epub 2014 Mar 26.

https://doi.org/10.1016/j.jbiosc.2014.02.014

197) Profiling of regioisomeric triacylglycerols in edible oils by supercritical fluid chromatography/tandem mass spectrometry.Lee JW, Nagai T, Gotoh N, Fukusaki E, Bamba T.

J Chromatogr B Analyt Technol Biomed Life Sci. 2014 Sep 1;966:193-9. doi: 10.1016/j.jchromb.2014.01.040. Epub 2014 Feb 3.

https://doi.org/10.1016/j.jchromb.2014.01.040

196) Practical evaluation of liquid chromatography/tandem mass spectrometry and enzyme immunoassay method for the accurate quantitative analysis of prostaglandins.

Izumi Y, Aritake K, Urade Y, Fukusaki E.

J Biosci Bioeng. 2014 Jul;118(1):116-8. doi: 10.1016/j.jbiosc.2013.12.022. Epub 2014 Feb 16.

https://doi.org/10.1016/j.jbiosc.2013.12.022

195) Analysis of the correlation between dipeptides and taste differences among soy sauces by using metabolomics-based component profiling.

Yamamoto S, Shiga K, Kodama Y, Imamura M, Uchida R, Obata A, Bamba T, Fukusaki E.

J Biosci Bioeng. 2014 Jul;118(1):56-63. doi: 10.1016/j.jbiosc.2013.12.019. Epub 2014 Feb 1.

https://doi.org/10.1016/j.jbiosc.2013.12.019

194) c-Src-induced activation of ceramide metabolism impairs membrane microdomains and promotes malignant progression by facilitating the translocation of c-Src to focal adhesions.

Kajiwara K, Yamada T, Bamba T, Fukusaki E, Imamoto F, Okada M, Oneyama C.

Biochem J. 2014 Feb 15;458(1):81-93. doi: 10.1042/BJ20130527.

https://doi.org/10.1042/BJ20130527

193) Cloning and functional analysis of HpFAD2 and HpFAD3 genes encoding Δ12- and Δ15-fatty acid desaturases in Hansenula polymorpha.

Sangwallek J, Kaneko Y, Tsukamoto T, Marui M, Sugiyama M, Ono H, Bamba T, Fukusaki E, Harashima S.

Gene. 2014 Jan 1;533(1):110-8. doi: 10.1016/j.gene.2013.09.115. Epub 2013 Oct 5.

https://doi.org/10.1016/j.gene.2013.09.115

192) Metabolite profiles of polyhydroxyalkanoate-producing Ralstonia eutropha H16

Toshiaki Fukui, Kenta Chou, Kazuo Harada, Izumi Orita, Yasumune Nakayama, Takeshi Bamba, Satoshi Nakamura, Eiichiro Fukusaki

Metabolomics (2014), vol10, issue2, pp. 190-201, doi:10.1007/s11306-013-0567-0

https://doi.org/10.1007/s11306-013-0567-0

191) Different-batch metabolome analysis of Saccharomyces cerevisiae based on gas chromatography/mass spectrometry.

Kawase N, Tsugawa H, Bamba T, Fukusaki E.

J Biosci Bioeng. 2014 Feb;117(2):248-55. doi: 10.1016/j.jbiosc.2013.07.008. Epub 2013 Aug 19.

https://doi.org/10.1016/j.jbiosc.2013.07.008

190) Metabolic profiling of urine and blood plasma in rat models of drug addiction on the basis of morphine, methamphetamine, and cocaine-induced conditioned place preference.

Zaitsu K, Miyawaki I, Bando K, Horie H, Shima N, Katagi M, Tatsuno M, Bamba T, Sato T, Ishii A, Tsuchihashi H, Suzuki K, Fukusaki E.

Anal Bioanal Chem. 2014 Feb;406(5):1339-54. doi: 10.1007/s00216-013-7234-1. Epub 2013 Aug 4.

https://doi.org/10.1007/s00216-013-7234-1

189) Highly sensitive and selective analysis of widely targeted metabolomics using gas chromatography/triple-quadrupole mass spectrometry.

Tsugawa H, Tsujimoto Y, Sugitate K, Sakui N, Nishiumi S, Bamba T, Fukusaki E.

J Biosci Bioeng. 2014 Jan;117(1):122-8. doi: 10.1016/j.jbiosc.2013.06.009. Epub 2013 Jul 16.

https://doi.org/10.1016/j.jbiosc.2013.06.009

2013

188) Ketoacyl synthase domain is a major determinant for fatty acyl chain length in Saccharomyces cerevisiae.

Sangwallek J, Kaneko Y, Sugiyama M, Ono H, Bamba T, Fukusaki E, Harashima S.

Arch Microbiol. 2013 Dec;195(12):843-52. doi: 10.1007/s00203-013-0933-3. Epub 2013 Nov 8.

187) Monitoring the ripening process of Cheddar cheese based on hydrophilic component profiling using gas chromatography-mass spectrometry.

Ochi H, Sakai Y, Koishihara H, Abe F, Bamba T, Fukusaki E.

J Dairy Sci. 2013 Dec;96(12):7427-41. doi: 10.3168/jds.2013-6897. Epub 2013 Oct 17.

186) SdrA, a new DeoR family regulator involved in Streptomyces avermitilis morphological development and antibiotic production.

Ulanova D, Kitani S, Fukusaki E, Nihira T.

Appl Environ Microbiol. 2013 Dec;79(24):7916-21. doi: 10.1128/AEM.02843-13. Epub 2013 Oct 11.

185) Fixation of CO2 in Clostridium cellulovorans analyzed by 13C-isotopomer-based target metabolomics.

Shinohara M, Sakuragi H, Morisaka H, Miyake H, Tamaru Y, Fukusaki E, Kuroda K, Ueda M.

AMB Express. 2013 Oct 9;3(1):61. doi: 10.1186/2191-0855-3-61.

184) Investigation of β-Cryptoxanthin Fatty Acid Ester Compositions in Citrus Fruits Cultivated in Japan

Yusuke Wada, Atsuki Matsubara, Takato Uchikata, Yugo Iwasaki, Satoshi Morimoto, Katsuta Kan, Tetsuya Ookura, Eiichiro Fukusaki, Takeshi Bamba

Food and Nutrition 4, 98-104 (2013) 

183) Method for Assessing the Statistical Significance of Mass Spectral Similarities Using Basic Local Alignment Search Tool Statistics.

Matsuda F, Tsugawa H, Fukusaki E.

Anal Chem. 2013 Sep 3;85(17):8291-7. doi: 10.1021/ac401564v. Epub 2013 Aug 14.

182) Selection of Discriminant Marker for Authentication of Asian Palm Civet Coffee (Kopi Luwak): A Metabolomics Approach.

Jumhawan U, Putri SP, Yusianto Y, Marwanni E, Bamba T, Fukusaki E.

J Agric Food Chem. 2013 Aug 21;61(33):7994-8001. doi: 10.1021/jf401819s. Epub 2013 Aug 12.

181) Metabolic Profiling of Oxidized Lipid-Derived Volatiles in Blood by Gas Chromatography/Mass Spectrometry with In-Tube Extraction

Shoji Kakuta, Yasuhiko Bando, Shin Nishiumi, Masaru Yoshida, Eiichiro Fukusaki, Takeshi Bamba

Mass Spectroometry Vol. 2 (2013) No. 1. doi: DOI: 10.5702/massspectrometry.A0018. Epub 2013 April 26

180) Survival Response to Increased Ceramide Involves Metabolic Adaptation through Novel Regulators of Glycolysis and Lipolysis.

Nirala NK, Rahman M, Walls SM, Singh A, Zhu LJ, Bamba T, Fukusaki E, Srideshikan SM, Harris GL, Ip YT, Bodmer R, Acharya UR.

PLoS Genet. 2013 Jun;9(6):e1003556. doi: 10.1371/journal.pgen.1003556. Epub 2013 Jun 20.

179) Supercritical fluid chromatography/Orbitrap mass spectrometry based lipidomics platform coupled with automated lipid identification software for accurate lipid profiling.

Yamada T, Uchikata T, Sakamoto S, Yokoi Y, Nishiumi S, Yoshida M, Fukusaki E, Bamba T.

J Chromatogr A. 2013 Aug 2;1301:237-42. doi: 10.1016/j.chroma.2013.05.057. Epub 2013 Jun 1.

178) Development of a practical metabolite identification technique for non-targeted metabolomics.

Ogura T, Bamba T, Fukusaki E.

J Chromatogr A. 2013 Aug 2;1301:73-9. doi: 10.1016/j.chroma.2013.05.054. Epub 2013 May 29.

177) Inflammation and Resolution Are Associated with Upregulation of Fatty Acid β-Oxidation in Zymosan-Induced Peritonitis.

Fujieda Y, Manno A, Hayashi Y, Rhodes N, Guo L, Arita M, Bamba T, Fukusaki E.

PLoS One. 2013 Jun 11;8(6):e66270. doi: 10.1371/journal.pone.0066270. Print 2013.

176) Simultaneous and rapid analysis of bile acids including conjugates by supercritical fluid chromatography coupled to tandem mass spectrometry.

Taguchi K, Fukusaki E, Bamba T.

J Chromatogr A. 2013 May 28. doi:pii: S0021-9673(13)00811-X. 10.1016/j.chroma.2013.05.043. [Epub ahead of print]

175) Acquisition of thermotolerant yeast Saccharomyces cerevisiae by breeding via stepwise adaptation.

Satomura A, Katsuyama Y, Miura N, Kuroda K, Tomio A, Bamba T, Fukusaki E, Ueda M.

Biotechnol Prog. 2013 May 16. doi: 10.1021/btpr.1754. [Epub ahead of print]

174) MRMPROBS: Data Assessment and Metabolite Identification Tool for Large-scale MRM-based Widely Targeted Metabolomics.

Tsugawa H, Arita M, Kanazawa M, Ogiwara A, Bamba T, Fukusaki E.

Anal Chem. 2013 May 21;85(10):5191-9. doi: 10.1021/ac400515s. Epub 2013 May 1.

173) Development of a lipid profiling system using reverse-phase liquid chromatography coupled to high-resolution mass spectrometry with rapid polarity switching and an automated lipid identification software.

Yamada T, Uchikata T, Sakamoto S, Yokoi Y, Fukusaki E, Bamba T.

J Chromatogr A. 2013 Jan 25. doi:pii: S0021-9673(13)00185-4. 10.1016/j.chroma.2013.01.078. [Epub ahead of print]

172) Simultaneous profiling of polar lipids by supercritical fluid chromatography/tandem mass spectrometry with methylation.

Lee JW, Nishiumi S, Yoshida M, Fukusaki E, Bamba T.

J Chromatogr A. 2013 Mar 1;1279:98-107. doi: 10.1016/j.chroma.2013.01.020. Epub 2013 Jan 10.

171) Application of ion mobility-mass spectrometry to microRNA analysis.

Takebayashi K, Hirose K, Izumi Y, Bamba T, Fukusaki E.

J Biosci Bioeng. 2013 Mar;115(3):332-8. doi: 10.1016/j.jbiosc.2012.10.006. Epub 2012 Nov 30.

170) Vascular plant one-zinc finger protein 1/2 transcription factors regulate abiotic and biotic stress responses in Arabidopsis.

Nakai Y, Nakahira Y, Sumida H, Takebayashi K, Nagasawa Y, Yamasaki K, Akiyama M, Ohme-Takagi M, Fujiwara S, Shiina T, Mitsuda N, Fukusaki E, Kubo Y, Sato MH.

Plant J. 2013 Mar;73(5):761-75. doi: 10.1111/tpj.12069. Epub 2013 Feb 12.

169) Effect of gallic acid on peptides released by trypsin digestion of bovine α-casein.

Lai P, Okazawa A, Izumi Y, Bamba T, Fukusaki E, Yoshikawa M, Kobayashi A.

J Biosci Bioeng. 2013 Mar;115(3):259-67. doi: 10.1016/j.jbiosc.2012.10.003. Epub 2012 Nov 17.

2012

168) High-throughput simultaneous analysis of pesticides by supercritical fluid chromatography/tandem mass spectrometry.

Ishibashi M, Ando T, Sakai M, Matsubara A, Uchikata T, Fukusaki E, Bamba T.

J Chromatogr A. 2012 Nov 30;1266:143-8. doi: 10.1016/j.chroma.2012.09.067. Epub 2012 Sep 28.

PMID: 23102524 [PubMed - as supplied by publisher]

167) Metabolite profiles correlate closely with neurobehavioral function in experimental spinal cord injury in rats.

Fujieda Y, Ueno S, Ogino R, Kuroda M, Jönsson TJ, Guo L, Bamba T, Fukusaki E.

PLoS One. 2012;7(8):e43152. Epub 2012 Aug 13.

PMID: 22912814 [PubMed - in process]

166) Metabolic fingerprinting of hard and semi-hard natural cheeses using gas chromatography with flame ionization detector for practical sensory prediction modeling.

Ochi H, Bamba T, Naito H, Iwatsuki K, Fukusaki E.

J Biosci Bioeng. 2012 Nov;114(5):506-11. doi: 10.1016/j.jbiosc.2012.06.002. Epub 2012 Jul 21.

PMID: 22824260 [PubMed - as supplied by publisher]

165) High-throughput and sensitive analysis of 3-monochloropropane-1,2-diol fatty acid esters in edible oils by supercritical fluid chromatography/tandem mass spectrometry.

Hori K, Matsubara A, Uchikata T, Tsumura K, Fukusaki E, Bamba T.

J Chromatogr A. 2012 Aug 10;1250:99-104. doi: 10.1016/j.chroma.2012.06.017. Epub 2012 Jun 15.

PMID: 22749582 [PubMed - in process]

164) High-throughput phospholipid profiling system based on supercritical fluid extraction-supercritical fluid chromatography/mass spectrometry for dried plasma spot analysis.

Uchikata T, Matsubara A, Fukusaki E, Bamba T.

J Chromatogr A. 2012 Aug 10;1250:69-75. Epub 2012 Jun 17.

PMID: 22749580 [PubMed - in process]

163) Chloroplast-mediated activation of plant immune signalling in Arabidopsis.

Nomura H, Komori T, Uemura S, Kanda Y, Shimotani K, Nakai K, Furuichi T, Takebayashi K, Sugimoto T, Sano S, Suwastika IN, Fukusaki E, Yoshioka H, Nakahira Y, Shiina T.

Nat Commun. 2012 Jun 26;3:926. doi: 10.1038/ncomms1926.

PMID: 22735454 [PubMed - in process]

162) Construction and analysis of EST libraries of the trans-polyisoprene producing plant, Eucommia ulmoides Oliver.

Suzuki N, Uefuji H, Nishikawa T, Mukai Y, Yamashita A, Hattori M, Ogasawara N, Bamba T, Fukusaki EI, Kobayashi A, Ogata Y, Sakurai N, Suzuki H, Shibata D, Nakazawa Y.

Planta. 2012 Nov;236(5):1405-17. doi: 10.1007/s00425-012-1679-x. Epub 2012 Jun 24.

PMID: 22729820 [PubMed - as supplied by publisher]

161) Development of oxidized phosphatidylcholine isomer profiling method using supercritical fluid chromatography/tandem mass spectrometry.

Uchikata T, Matsubara A, Nishiumi S, Yoshida M, Fukusaki E, Bamba T.

J Chromatogr A. 2012 Aug 10;1250:205-11. doi: 10.1016/j.chroma.2012.05.083. Epub 2012 May 30.

PMID: 22717033 [PubMed - as supplied by publisher]

160) High-accuracy analysis system for the redox status of coenzyme Q(10) by online supercritical fluid extraction-supercritical fluid chromatography/mass spectrometry.

Matsubara A, Harada K, Hirata K, Fukusaki E, Bamba T.

J Chromatogr A. 2012 Aug 10;1250:76-9. Epub 2012 May 9.

PMID: 22673808 [PubMed - in process]

159) Identification of Biomarkers of Stent Restenosis With Serum Metabolomic Profiling Using Gas Chromatography/Mass Spectrometry.

Hasokawa M, Shinohara M, Tsugawa H, Bamba T, Fukusaki E, Nishiumi S, Nishimura K, Yoshida M, Ishida T, Hirata Circ J. 2012;76(8):1864-73. Epub 2012 May 16. 

158) Gallic acid oxidizes Met residues in peptides released from bovine β-lactoglobulin by in vitro digestion.

Lai P, Okazawa A, Izumi Y, Bamba T, Fukusaki E, Yoshikawa M, Kobayashi A.

J Biosci Bioeng. 2012 Sep;114(3):297-305. Epub 2012 May 30.

157) Gas chromatography-mass spectrometry based metabolic profiling for the identification of discrimination markers of Angelicae Radix and its application to gas chromatography-flame ionization detector system.

Kobayashi S, Putri SP, Yamamoto Y, Donghyo K, Bamba T, Fukusaki E.

J Biosci Bioeng. 2012 Aug;114(2):232-6. Epub 2012 May 25.

PMID: 22633242 [PubMed - in process]

156) Metabolic profiling and identification of the genetic varieties and agricultural origin of Cnidium officinale and Ligusticum chuanxiong.

Kobayashi S, Nagasawa S, Yamamoto Y, Donghyo K, Bamba T, Fukusaki E.

J Biosci Bioeng. 2012 Jul;114(1):86-91. Epub 2012 May 22.

PMID: 22627050 [PubMed - in process]

155) Metabolite profiling of soy sauce using gas chromatography with time-of-flight mass spectrometry and analysis of correlation with quantitative descriptive analysis.

Yamamoto S, Bamba T, Sano A, Kodama Y, Imamura M, Obata A, Fukusaki E.

J Biosci Bioeng. 2012 Aug;114(2):170-5. Epub 2012 May 19.

PMID: 22608993 [PubMed - in process]

154) Metabolomics-based component profiling of hard and semi-hard natural cheeses with gas chromatography/time-of-flight-mass spectrometry, and its application to sensory predictive modeling.

Ochi H, Naito H, Iwatsuki K, Bamba T, Fukusaki E.

J Biosci Bioeng. 2012 Jun;113(6):751-8. Epub 2012 Mar 2.

PMID: 22386562 [PubMed - as supplied by publisher]

153) Highly sensitive and rapid profiling method for carotenoids and their epoxidized products using supercritical fluid chromatography coupled with electrospray ionization- triple quadrupole mass spectrometry.

Matsubara A, Uchikata T, Shinohara M, Nishiumi S, Yoshida M, Fukusaki E, Bamba T.

J Biosci Bioeng. 2012 Jun;113(6):782-7. Epub 2012 Feb 29.PMID: 22382010 [PubMed - as supplied by publisher]

152) Application of electrospray ionization ion trap/time-of-flight mass spectrometry for chemically-synthesized small RNAs.

Izumi Y, Takimura S, Yamaguchi S, Iida J, Bamba T, Fukusaki E.

J Biosci Bioeng. 2012 Mar;113(3):412-9. Epub 2011 Dec 5.PMID: 22153845 [PubMed - as supplied by publisher]

151) Serum metabolomics as a novel diagnostic approach for gastrointestinal cancer.

Ikeda A, Nishiumi S, Shinohara M, Yoshie T, Hatano N, Okuno T, Bamba T, Fukusaki E, Takenawa T, Azuma T, Yoshida M.

Biomed Chromatogr. 2012 May;26(5):548-58. doi: 10.1002/bmc.1671. Epub 2011 Jul 20.

2011

150) Development of a polar lipid profiling method by supercritical fluid chromatography/mass spectrometry.

Lee JW, Yamamoto T, Uchikata T, Matsubara A, Fukusaki E, Bamba T.

J Sep Sci. 2011 Dec;34(24):3553-60. doi: 10.1002/jssc.201100539.

PMID: 22162440 [PubMed - in process]

149) Use of ultra-performance liquid chromatography/time-of-flight mass spectrometry with nozzle-skimmer fragmentation for comprehensive quantitative analysis of secondary metabolites in Arabidopsis thaliana.

Sugimoto T, Bamba T, Izumi Y, Nomura H, Shiina T, Fukusaki E.

J Sep Sci. 2011 Dec;34(24):3587-96. doi: 10.1002/jssc.201100552. Epub 2011 Nov 21.

PMID: 22102342 [PubMed - in process]

148) Application of supercritical fluid chromatography/mass spectrometry to lipid profiling of soybean.

Lee JW, Uchikata T, Matsubara A, Nakamura T, Fukusaki E, Bamba T.

J Biosci Bioeng. 2012 Feb;113(2):262-8. Epub 2011 Nov 21.

PMID: 22100899 [PubMed - in process]

147) Metabolic profiling of β-cryptoxanthin and its fatty acid esters by supercritical fluid chromatography coupled with triple quadrupole mass spectrometry.

Wada Y, Matsubara A, Uchikata T, Iwasaki Y, Morimoto S, Kan K, Okura T, Fukusaki E, Bamba T.

J Sep Sci. 2011 Dec;34(24):3546-52. doi: 10.1002/jssc.201100376. Epub 2011 Oct 31.

PMID: 22038763 [PubMed - in process]

146) Simultaneous quantification of lignans in Arabidopsis thaliana by highly sensitive capillary liquid chromatography-electrospray ionization-ion trap mass spectrometry.

Atsushi Okazawa, Katsuhito Hori, Ryohei Okumura, Yoshihiro Izumi, Naoki Hata, TakeshiBamba, Eiichiro Fukusaki, Eiichiro Ono, Honoo Satake and Akio Kobayashi

Plant Biotechnology, Vol. 28 (2011) , No. 3 pp.287-293

145) Predication of Japanese green tea (Sen-cha) ranking by volatile profiling using gas chromatography mass spectrometry and multivariate analysis.

Jumtee K, Komura H, Bamba T, Fukusaki E.

J Biosci Bioeng. 2011 Sep;112(3):252-5. Epub 2011 Jun 12.

144) Influences of methamphetamine-induced acute intoxication on urinary and plasma metabolic profiles in the rat.

Shima N, Miyawaki I, Bando K, Horie H, Zaitsu K, Katagi M, Bamba T, Tsuchihashi H, Fukusaki E. 

Toxicology. 2011 Sep 5;287(1-3):29-37. Epub 2011 May 27.

143) Practical non-targeted gas chromatography/mass spectrometry-based metabolomics platform for metabolic phenotype analysis. 

Tsugawa H, Bamba T, Shinohara M, Nishiumi S, Yoshida M, Fukusaki E. 

J Biosci Bioeng. 2011 Sep;112(3):292-8. Epub 2011 Jun 8.

142) Application of Fourier transform near-infrared spectroscopy to optimization of green tea steaming process conditions.

Ono D, Bamba T, Oku Y, Yonetani T, Fukusaki E. 

J Biosci Bioeng. 2011 Sep;112(3):247-51. Epub 2011 Jun 2.

141) Single-embryo metabolomics and systematic prediction of developmental stage in zebrafish.

Hayashi S, Yoshida M, Fujiwara T, Maegawa S, Fukusaki E.

Z Naturforsch C. 2011 Mar-Apr;66(3-4):191-8.

140) GC/MS based metabolomics: development of a data mining system for metabolite identification by using soft independent modeling of class analogy (SIMCA). 

Tsugawa H, Tsujimoto Y, Arita M, Bamba T, Fukusaki E.

BMC Bioinformatics. 2011 May 4;12:131.

139) A metabolomic approach to lung cancer.

Hori S, Nishiumi S, Kobayashi K, Shinohara M, Hatakeyama Y, Kotani Y, Hatano N, Maniwa Y, Nishio W, Bamba T, Fukusaki E, Azuma T, Takenawa T, Nishimura Y, Yoshida M.

Lung Cancer. 2011 Nov;74(2):284-92. Epub 2011 Mar 15.

138) GABA metabolism pathway genes, UGA1 and GAD1, regulate replicative lifespan in Saccharomyces cerevisiae.

Kamei Y, Tamura T, Yoshida R, Ohta S, Fukusaki E, Mukai Y.

Biochem Biophys Res Commun. 2011 Apr 1;407(1):185-90. Epub 2011 Mar 1.

137) Sphingosine kinases and their metabolites modulate endolysosomal trafficking in photoreceptors.

Yonamine I, Bamba T, Nirala NK, Jesmin N, Kosakowska-Cholody T, Nagashima K, Fukusaki E, Acharya JK, Acharya U.

J Cell Biol. 2011 Feb 21;192(4):557-67. Epub 2011 Feb 14.

PMID: 21321100 [PubMed - indexed for MEDLINE]

136) GC-MS-based metabolomics reveals mechanism of action for hydrazine induced hepatotoxicity in rats.

Bando K, Kunimatsu T, Sakai J, Kimura J, Funabashi H, Seki T, Bamba T, Fukusaki E.

J Appl Toxicol,.2011. 31(6): 524-535. Epub Date 2010/12/15 

PMID: 21154879 [PubMed - as supplied by publisher]

135) Fluorescence-monitored zero dead-volume nanoLC-microESI-QIT-TOF MS for analysis of fluorescently tagged glycosphingolipids.

Daikoku S, Ono Y, Ohtake A, Hasegawa Y, Fukusaki E, Suzuki K, Ito Y, Goto S, Kanie O.

Analyst. 2011 Mar 7;136(5):1046-50. Epub 2010 Dec 20.

PMID: 21173959 [PubMed - indexed for MEDLINE]

134) CDase is a pan-ceramidase in Drosophila.

Yuan C, Rao RP, Jesmin N, Bamba T, Nagashima K, Pascual A, Preat T, Fukusaki E, Acharya U, Acharya JK.

Mol Biol Cell. 2011 Jan 1;22(1):33-43. Epub 2010 Dec 9.

PMID: 21148295 [PubMed - indexed for MEDLINE] 

2010 

133) Nishiumi, S., M. Shinohara, A. Ikeda, T. Yoshie, N. Hatano, S. Kakuyama, S. Mizuno, T. Sanuki, H. Kutsumi, E. Fukusaki, T. Azuma, T. Takenawa, and M. Yoshida, Serum metabolomics as a novel diagnostic approach for pancreatic cancer. Metabolomics, 2010. 6(4): p. 518-528.

https://doi.org/10.1007/s11306-010-0224-9

132) Bamba T, Murayoshi M, Gyoksen K, Nakazawa Y, Okumoto H, Katto H, Fukusaki E, Kobayashi A. " Contribution of mevalonate and methylerythritol phosphate pathways to polyisoprenoid biosynthesis in the rubber-producing plantEucommia ulmoides oliver." Z Naturforsch C. 2010 May-Jun;65(5-6):363-72. [Pub Med

131) Bando, K., R. Kawahara, T. Kunimatsu, J. Sakai, J. Kimura, H. Funabashi, T. Seki, T. Bamba and E. Fukusaki. "Influences of biofluid sample collection and handling procedures on GC-MS based metabolomic studies." J Biosci Bioeng. 110(4): p. 491-499. Epub date 2010/06/17 [Pub Med]

130) Yoshida, R., T. Tamura, C. Takaoka, K. Harada, A. Kobayashi, Y. Mukai and E. Fukusaki. "Metabolomics-based systematic prediction of yeast lifespan and its application for semi-rational screening of aging-related mutants." Aging Cell. 2010 Aug;9(4):616-25. Epub 2010 Jun 9. [Pub Med]

129) Ishikawa, K., Yoshimura, K., Harada, K., Fukusaki, E., Ogawa, T., Tamoi, M. and Shigeoka, S. "AtNUDX6, an ADP-ribose/NADH pyrophosphohydrolase in Arabidopsis, positively regulates NPR1-dependent salicylic acid signaling." Plant Physiol. 154(4): 2000-2012 (2010) Epub 2010/02/24 [Pub Med]

128) Tianniam, S., Bamba, T. and Fukusaki, E. "Pyrolysis GC-MS-based metabolite fingerprinting for quality evaluation of commercial Angelica acutiloba roots." J Biosci Bioeng 109(1): 89-93 (2010) Epub date 2009/07/23 [Pub Med]

127) Hasunuma, T., Harada, K., Miyazawa, S., Kondo, A., Fukusaki, E. and Miyake, C. "Metabolic turnover analysis by a combination of in vivo 13C-labelling from 13CO2 and metabolic profiling with CE-MS/MS reveals rate-limiting steps of the C3 photosynthetic pathway in Nicotiana tabacum leaves." J Exp Bot 61(4): 1041-1051.(2010) Epub date 2009/12/21 [Pub Med]

126) Takeno, S., Bamba, T., Nakazawa, Y., Fukusaki, E., Okazawa, A. and Kobayashi, A. "High-Throughput and Highly Sensitive Analysis Method for Polyisoprene in Plants by Pyrolysis-Gas Chromatography/Mass Spectrometry." Biosci Biotechnol Biochem. 74(1): 13-17 (2010). Epub date 2010/01/07 [Pub Med]

2009

125) Ikeda, T., Altaf-Ul-Amin, M., Takabayashi, H. and Fukusaki, E. "DrEFTIR: The data mining software for fourier transform near-infrared reflectance spectroscopy focused on food metabolic finger printing." Plant Biotechnology 26(5): 451-457.(2009) [J-stage]

124) Dasgupta, U., Bamba, T., Chiantia, S., Karim, P., Abou Tayoun, A. N., Yonamine, I., Rawat, S. S., Rao, R. P., Nagashima, K., Fukusaki, E., Puri, V., Dolph, P. J., Schwille, P., Acharya, J. K. and Acharya, U. "Ceramide kinase regulates phospholipase C and phosphatidylinositol 4, 5, bisphosphate in phototransduction." Proc Natl Acad Sci U S A.106(47): 20063-20068 (2009) Epub date 2009/11/05 [Pub Med]

123) Yamamoto, H., Yamaji, H., Abe, Y., Harada, K., Waluyo, D., Fukusaki, E., Kondo, A., Ohno, H. and Fukuda, H. "Dimensionality reduction for metabolome data using PCA, PLS, OPLS, and RFDA with differential penalties to latent variables." Chemometrics and Intelligent Laboratory Systems. 98. 136-142 (2009) Epub date 2009/06/02

http://10.1016/j.chemolab.2009.05.006

122) Ishikawa, K., Ogawa, T., Hirosue, E., Nakayama, Y., Harada, K., Fukusaki, E., Yoshimura, K. and Shigeoka, S. "Modulation of the poly(ADP-ribosyl)ation reaction via the Arabidopsis ADP-ribose/NADH pyrophosphohydrolase, AtNUDX7, is involved in the response to oxidative stress." Plant Physiol. 151, 741-754 (2009) Epub date 2009/08/05 [Pub Med]

121) Yamada, Y., Fukuda, W., Hirooka, K., Hiromoto, T., Nakayama, J., Imanaka, T., Fukusaki, E. and Fujiwara, S. "Efficient in vitro synthesis of cis-polyisoprenes using a thermostable cis-prenyltransferase from a hyperthermophilic archaeon Thermococcus kodakaraensis." J Biotechnol 143(2): 151-156.(2009) Epub date 2009/07/05 [Pub Med]

120）Takagi, K., Okazawa, A., Wada, Y., Mongkolchaiyaphruek, A., Fukusaki, E., Yoneyama, K., Takeuchi, Y. and Kobayashi, A. "Unique phytochrome responses of the holoparasitic plant Orobanche minor." New Phytol 182(4): 965-974. (2009) Epub date 2009/03/20 [Pub Med]

119) Izumi, Y., Okazawa, A., Bamba, T., Kobayashi, A. and Fukusaki, E. "Development of a method for comprehensive and quantitative analysis of plant hormones by highly sensitive nanoflow liquid chromatography-electrospray ionization-ion trap mass spectrometry." Anal Chim Acta 648(2): 215-225.(2009) Epub date 2009/07/04 [Pub Med]

118) Jumtee, K., Okazawa, A., Harada, K., Fukusaki, E., Takano, M. and Kobayashi, A. "Comprehensive metabolite profiling of phyA phyB phyC triple mutants to reveal their associated metabolic phenotype in rice leaves." J Biosci Bioeng108(2): 151-159.(2009) [Pub Med]

117) Jumtee, K., Bamba, T. and Fukusaki, E. "Fast GC-FID based metabolic fingerprinting of Japanese green tea leaf for its quality ranking prediction." J Sep Sci 32(13): 2296-2304.(2009) Epub date 2009/06/30 [Pub Med]

116) Tianniam, S., Bamba, T. and Fukusaki, E. "Non-targeted metabolite fingerprinting of oriental folk medicine Angelica acutiloba roots by ultra performance liquid chromatography time-of-flight mass spectrometry." J Sep Sci 32(13): 2233-2244.(2009) Epub date 2009/06/30 [Pub Med]

115) Hayashi, S., Akiyama, S., Tamaru, Y., Takeda, Y., Fujiwara, T., Inoue, K., Kobayashi, A., Maegawa, S. and Fukusaki, E. "A novel application of metabolomics in vertebrate development." Biochem Biophys Res Commun 386(1): 268-272.(2009) Epub date 2009/06/10 [Pub Med]

114) Sando, T., Hayashi, T., Takeda, T., Akiyama, Y., Nakazawa, Y., Fukusaki, E. and Kobayashi, A. "Histochemical study of detailed laticifer structure and rubber biosynthesis-related protein localization in Hevea brasiliensis using spectral confocal laser scanning microscopy." Planta. 230(1): 215-225. (2009) Epub date 2009/05/05 [Pub Med]

113) Matsubara, A., Bamba, T., Ishida, H., Fukusaki, E. and Hirata, K. "Highly sensitive and accurate profiling of carotenoids by supercritical fluid chromatography coupled with mass spectrometry." J Sep Sci 32(9): 1459-1464.(2009) Epub date 2009/04/09 [Pub Med]

112) Oishi, T., Tanaka, K.-i., Hashimoto, T., Shinbo, Y., Jumtee, K., Bamba, T., Fukusaki, E., Suzuki, H., Shibata, D., Takahashi, H., Asahi, H., Kurokawa, K., Nakamura, Y., Hirai, A., Nakamura, K., Altaf-Ul-Amin, M. and Kanaya, S. "An approach to peak detection in GC-MS chromatograms and application of KNApSAcK database in prediction of candidate metabolites." Plant Biotechnology 26(1): 167-174.(2009)

https://doi.org/10.5511/plantbiotechnology.26.167

111) Izumi, Y., Kajiyama, S., Nakamura, R., Ishihara, A., Okazawa, A., Fukusaki, E., Kanematsu, Y. and Kobayashi, A. "High-resolution spatial and temporal analysis of phytoalexin production in oats." Planta 229(4): 931-943.(2009) , Epubdate 2009 Jan 16. [Pub Med]

110) Kim, J. H., Sunako, M., Ono, H., Murooka, Y., Fukusaki, E. and Yamashita, M. "Characterization of the C-terminal truncated form of amylopullulanase from Lactobacillus plantarum L137." J Biosci Bioeng 107(2): 124-129.(2009) [Pub Med]

109) Igarashi, D., Izumi, Y., Dokiya, Y., Totsuka, K., Fukusaki, E. and Ohsumi, C. "Reproductive organs regulate leaf nitrogen metabolism mediated by cytokinin signal." Planta 229(3): 633-644.(2009) , Epub date 2008 Dec 2. [Pub Med]

108) Ogawa, T., Ishikawa, K., Harada, K., Fukusaki, E., Yoshimura, K. and Shigeoka, S. "Overexpression of an ADP-ribose pyrophosphatase, AtNUDX2, confers enhanced tolerance to oxidative stress in Arabidopsis plants." Plant J 57(2): 289-301.(2009) , Epub date 2008 Oct 14. [Pub Med]

2008

107) Kawai, S., Phan, T. A., Kono, E., Harada, K., Okai, C., Fukusaki, E. and Murata, K. "Transcriptional and metabolic response in yeast Saccharomyces cerevisiae cells during polyethylene glycol-dependent transformation." J Basic Microbiol 49(1): 73-81.(2008) , Epub date 2008 Sep 16 [Pub Med]

106) Takeno, S., Bamba, T., Nakazawa, Y., Fukusaki, E., Okazawa, A. and Kobayashi, A. "A high-throughput and solvent-free method for measurement of natural polyisoprene content in leaves by Fourier transform near infrared spectroscopy." J Biosci Bioeng 106(6): 537-540.(2008) [PubMed]

105) Kim, J. H., Sunako, M., Ono, H., Murooka, Y., Fukusaki, E. and Yamashita, M. "Characterization of Gene Encoding Amylopullulanase from Plant-Originated Lactic Acid Bacterium, Lactobacillus plantarum L137." J Biosci Bioeng 106(5): 449-459.(2008) [Pub Med]

104) Sando, T., Takeno, S., Watanabe, N., Okumoto, H., Kuzuyama, T., Yamashita, A., Hattori, M., Ogasawara, N., Fukusaki, E. and Kobayashi, A. "Cloning and Characterization of the 2-C-Methyl-D-erythritol 4-Phosphate (MEP) Pathway Genes of a Natural-Rubber Producing Plant, Hevea brasiliensis." Biosci Biotechnol Biochem. 72(11), 2903-2917 (2008) [Pub Med]

103) Pongsuwan, W., Bamba, T., Harada, K., Yonetani, T., Kobayashi, A. and Fukusaki, E. "High-Throughput Technique for Comprehensive Analysis of Japanese Green Tea Quality Assessment Using Ultra-performance Liquid Chromatography with Time-of-Flight Mass Spectrometry (UPLC/TOF MS)." J Agric Food Chem 56(22): 10705-10708.(2008) [Pub Med]

102) Kajiyama, S., Joseph, B., Inoue, F., Shimamura, M., Fukusaki, E., Tomizawa, K. and Kobayashi, A. "Transient gene expression in guard cell chloroplasts of tobacco using ArF excimer laser microablation." J Biosci Bioeng 106(2): 194-198.(2008) [Pub Med]

101) Sando, T., Takaoka, C., Mukai, Y., Yamashita, A., Hattori, M., Ogasawara, N., Fukusaki, E. and Kobayashi, A. "Cloning and Characterization of Mevalonate Pathway Genes in a Natural Rubber Producing Plant, Hevea brasiliensis."Biosci Biotechnol Biochem.72(8): 2049-2060 (2008) [Pub Med]

100) Tarachiwin, L., Katoh, A., Ute, K. and Fukusaki, E. "Quality evaluation of Angelica acutiloba Kitagawa roots by (1)H NMR-based metabolic fingerprinting." J Pharm Biomed Anal. 48(1): 42-48 (2008) [Pub Med]

99) Tianniam, S., Tarachiwin, L., Bamba, T., Kobayashi, A. and Fukusaki, E. "Metabolic profiling of Angelica acutilobaroots utilizing gas chromatography-time-of-flight-mass spectrometry for quality assessment based on cultivation area and cultivar via multivariate pattern recognition." J Biosci Bioeng 105(6): 655-659.(2008) [Pub Med]

98) Tarachiwin, L., Masako, O. and Fukusaki, E. "Quality evaluation and prediction of Citrullus lanatus by 1H NMR-based metabolomics and multivariate analysis." J Agric Food Chem 56(14): 5827-5835.(2008) [Pub Med]

97) Okajima, M. K., Bamba, T., Kaneso, Y., Hirata, K., Fukusaki, E., Kajiyama, S. i. and Kaneko, T. "Supergiant Ampholytic Sugar Chains with Iimbalanced Charge Ratio from Saline Ultra-absorbent Hydrogels." Macromolecules 41(12): 4061-4064.(2008)

https://doi.org/10.1021/ma800307w

96) Bamba, T., Shimonishi, N., Matsubara, A., Hirata, K., Nakazawa, Y., Kobayashi, A. and Fukusaki, E. "High throughput and exhaustive analysis of diverse lipids by using supercritical fluid chromatography-mass spectrometry for metabolomics." J Biosci Bioeng 105(5): 460-469.(2008) [Pub Med]

95) Hasunuma, T., Takeno, S., Hayashi, S., Sendai, M., Bamba, T., Yoshimura, S., Tomizawa, K., Fukusaki, E. and Miyake, C. "Overexpression of 1-Deoxy-d-xylulose-5-phosphate reductoisomerase gene in chloroplast contributes to increment of isoprenoid production." J Biosci Bioeng 105(5): 518-526.(2008) [Pub Med]

94) Yamamoto, H., Yamaji, H., Fukusaki, E., Ohno, H. and Fukuda, H. "Canonical correlation analysis for multivariate regression and its application to metabolic fingerprinting." Biochemical Engineering Journal 40(2): 199-204.(2008)

https://doi.org/10.1016/j.bej.2007.12.009

93) Takeno, S., Bamba, T., Nakazawa, Y., Fukusaki, E., Okazawa, A. and Kobayashi, A. "Quantification of trans-1,4-polyisoprene in Eucommia ulmoides by fourier transform infrared spectroscopy and pyrolysis-gas chromatography/mass spectrometry." J Biosci Bioeng 105(4): 355-359.(2008) [Pub Med]

92) Ikeda, T., Altaf-Ul-Amin, M., Prvin, A. K., Kanaya, S., Yonetani, T. and Fukusaki, E. "Predicting Rank of Japanese Green Teas by Derivative Profiles of Spectra Obtained from Fourier Transform Near-Infrared Reflectance Spectroscopy."Journal of Computer Aided Chemistry 9: 37-46.(2008)

https://doi.org/10.2751/jcac.9.37

91) Jumtee, K., Bamba, T., Okazawa, A., Fukusaki, E. and Kobayashi, A. "Integrated metabolite and gene expression profiling revealing phytochrome A regulation of polyamine biosynthesis of Arabidopsis thaliana." J Exp Bot. 59 (6): 1187-1200 (2008) [Pub Med]

90) Harada, K., Ohyama, Y., Tabushi, T., Kobayashi, A. and Fukusaki, E. "Quantitative analysis of anionic metabolites forCatharanthus roseus by capillary electrophoresis using sulfonated capillary coupled with electrospray ionization-tandem mass spectrometry." J Biosci Bioeng 105(3): 249-260.(2008) [Pub Med]

89) Pongsuwan, W., Bamba, T., Yonetani, T., Kobayashi, A. and Fukusaki, E. "Quality Prediction of Japanese Green Tea Using Pyrolyzer Coupled GC/MS Based Metabolic Fingerprinting." J Agric Food Chem. 56(3): 744-750 (2008) [Pub Med]

88) Fujiwara, S., Yamanaka, A., Yamada, Y., Hirooka, K., Higashibata, H., Fukuda, W., Nakayama, J., Imanaka, T. and Fukusaki, E. "Efficient synthesis of trans-polyisoprene compounds using two thermostable enzymes in an organic-aqueous dual-liquid phase system." Biochem Biophys Res Commun 365(1): 118-123.(2008) [Pub Med]

87) Prasitchoke, P., Kaneko, Y., Bamba, T., Fukusaki, E., Kobayashi, A. and Harashima, S. "The essential fatty acid myristate causes severe growth retardation in Hpelo disruptants of the yeast Hansenula polymorpha." Arch Microbiol189(4): 297-304.(2008) [Pub Med]

2007

86) Ikeda, T., Kanaya, S., Yonetani, T., Kobayashi, A. and Fukusaki, E. "Prediction of Japanese green tea ranking by fourier transform near-infrared reflectance spectroscopy." J Agric Food Chem 55(24): 9908-9912.(2007) [Pub Med]

85) Tarachiwin, L., Ute, K., Kobayashi, A. and Fukusaki, E. "(1)H NMR based metabolic profiling in the evaluation of Japanese green tea quality." J Agric Food Chem 55(23): 9330-9336.(2007) [Pub Med]

84) Kajiyama, S., Inoue, F., Yoshikawa, Y., Shoji, T., Fukusaki, E. and Kobayashi, A. "Novel plant transformation system by gene-coated gold particle introduction into specific cell 

using ArF excimer laser." Plant Biotechnology 24: 315-320.(2007)

https://doi.org/10.5511/plantbiotechnology.24.315

83) Sakakura, M., Kajiyama, S., Tsutsumi, M., Si, J., Fukusaki, E., Tamaru, Y., Akiyama, S., Miura, K., Hirao, K. and Ueda, M. "Femtosecond Pulsed Laser as a Microscalpel for Microdissection and Isolation of Specific Sections from Biological Samples." Jpn. J. Appl. Phys. 46(9A): 5859-5864.(2007) 

https://doi.org/10.1143/JJAP.46.5859

82) Kim, J. K., Cho, M. R., Baek, H. J., Ryu, T. H., Yu, c. Y., Kim, M. J., Fukusaki, E. and Kobayashi, A. "Analysis of Metabolite Profile Data Using Batch-Learning Self-Organizing Maps." Journal of Plant Biology 50(4): 517-521.(2007)

81) Bamba, T., Sando, T., Miyabashira, A., Gyokusen, K., Nakazawa, Y., Su, Y., Fukusaki, E. and Kobayashi, A. "Periploca sepium Bunge as a model plant for rubber biosynthesis study." Z Naturforsch [C] 62(7-8): 579-582.(2007) [Pub Med]

80) Prasitchoke, P., Kaneko, Y., Sugiyama, M., Bamba, T., Fukusaki, E., Kobayashi, A. and Harashima, S. "Functional analysis of very long-chain fatty acid elongase gene, HpELO2, in the methylotrophic yeast Hansenula polymorpha." Appl Microbiol Biotechnol 76(2): 417-427.(2007) [Pub Med]

79) Prasitchoke, P., Kaneko, Y., Bamba, T., Fukusaki, E., Kobayashi, A. and Harashima, S. "Identification and characterization of a very long-chain fatty acid elongase gene in the methylotrophic yeast, Hansenula polymorpha." Gene391(1-2): 16-25.(2007) [Pub Med]

78) Kim, J. K., Bamba, T., Harada, K., Fukusaki, E. and Kobayashi, A. "Time-course metabolic profiling in Arabidopsis thaliana cell cultures after salt stress treatment." J Exp Bot 58(3): 415-424.(2007) [Pub Med]

77) Pongsuwan, W., Fukusaki, E., Bamba, T., Yonetani, T., Yamahara, T. and Kobayashi, A. "Prediction of Japanese green tea ranking by gas chromatography/mass spectrometry-based hydrophilic metabolite fingerprinting." J Agric Food Chem 55(2): 231-236.(2007) [Pub Med]

2006

76) Kajiyama, S., Harada, K., Fukusaki, E. and Kobayashi, A. "Single cell-based analysis of Torenia petal pigments by a combination of ArF excimer laser microsampling and nano HPLC mass spectrometry." J Biosci Bioeng. 102(6): 575-578.(2006) [Pub Med]

75) Ohnishi, N., Furukawa, H., Hideyuki, H., Wang, J.-M., An, C.-I., Fukusaki, E., Kataoka, K., Ueno, K. and Kondo, A. "High-Efficiency Bioaffinity Separation of Cells and Proteins Using Novel Thermoresponsive Biotinylated Magnetic Nanoparticles." NanoBiotechnology 2(1-2): 43-49.(2006)

https://doi.org/10.1007/s12030-006-0006-7

74) Ute, K., Yoshida, S., Kitayama, T., Bamba, T., Harada, K., Fukusaki, E., Kobayashi, A., Ishizuka, N., Minakuchi, H. and Nakanishi, K. "Size Exclusion Chromatography of Standard Polystyrenes with a Wide Range of Molecular Weight Up to 7.45 106 on Monolithic Silica Capillary columns." Polymer Journal 38(11): 1194-1197.(2006) [J-Stage]

73) Harada, K., Fukusaki, E., Bamba, T., Sato, F. and Kobayashi, A. "In vivo (15)n-enrichment of metabolites in suspension cultured cells and its application to metabolomics." Biotechnol Prog 22(4): 1003-1011.(2006) [Pub Med]

72) Harada, K., E. Fukusaki, and A. Kobayashi, "Pressure-Assisted Capillary Electrophoresis Mass Spectrometry using a Combination of Polarity Reversion and Electroosmotic Flow for the Metabolomics Anion Analysis." J. Biosci. Bioeng.:101(5): 403-409.(2006) [Pub Med]

71) Fukusaki, E., K. Jumtee, T. Bamba, T. Yamaji, and A. Kobayashi, "Metabolic fingerprinting and profiling of Arabidopsis thaliana leaf and its cultured cells T87 by GC/MS." Z Naturforsch [C], 61(3-4): 267-72.(2006) [Pub Med]

70) Okazawa, A., L. Tango, Y. Itoh, E. Fukusaki, and A. Kobayashi, "Characterization and subcellular localization of chlorophyllase from Ginkgo biloba." Z Naturforsch [C], 61(1-2): 111-7.(2006) [Pub Med]

69) Tabata, A., F. Namba, M. Yamada, T. Hasegawa, K. Nakahira, D. Hamada, H. Kitajima, E. Fukusaki, and I. Yanagihara, "Expression and purification of recombinant human annexin A2 in Pichia pastoris and utility of expression product for detecting annexin A2 antibody." J Biosci Bioeng, 101(2): 190-197.(2006) [Pub Med]

68) Kajiyama, S., T. Shoji, S. Okuda, Y. Izumi, E. Fukusaki, and A. Kobayashi, "A novel microsurgery method for intact plant tissue at the single cell level using ArF excimer laser microprojection." Biotechnol Bioeng, 93(2): 325-31.(2006) [Pub Med]

2005

67) Bamba, T., Fukusaki, E., Minakuchi, H., Nakazawa, Y., and Kobayashi, A.: Separation of polyprenol and dolichol by monolithic silica capillary column chromatography. J Lipid Res, 46, 2295-8(2005). [Pub Med]

66) Kim, J.K., K. Harada, T. Bamba, E. Fukusaki, and A. Kobayashi, "Stable isotope dilution-based accurate comparative quantification of nitrogen-containing metabolites in Arabidopsis thaliana T87 cells using in vivo 15N-isotope enrichment."Biosci Biotechnol Biochem, 69(7): 1331-40.(2005) [Pub Med] 

65) Nakae, Y., E.i. Fukusaki, S.-i. Kajiyama, A. Kobayashi, and I. Sakata, "Syntheses and Screening Tests of New Chlorin Derivatives as Photosensitizer." Journal of Photochemistry and PhotoBiology A: Chemistry: 174(3): 187-193.(2005)[Science Direct]

64) Fukui, T., Shiraki, K., Hamada, D., Hara, K., Miyata, T., Fujiwara, S., Mayanagi, K., Yanagihara, K., Iida, T., Fukusaki, E., Imanaka, T., Honda, T., and Yanagihara, I.: Thermostable Direct Hemolysin of Vibrio parahaemolyticus is a Bacterial Reversible Amyloid Toxin., Biochemistry, 44, 9825-9832 (2005). [Pub Med] 

63) Tarachiwin, L., Sakdapipanich, J., Ute, K., Kitayama, T., Bamba, T., Fukusaki, E.-i., Kobayashi, A., and Tanaka, Y.: Structural Characterization of a-Terminal Group of Natural Rubber. 1. Decomposition of Branch-Points by Lipase and Phosphatase Treatments., Biomacromolecules, 6, 1851-1857 (2005). [Pub Med]

62) Okazawa, A., Trakulnaleamsai, C., Hiramatsu, H., Fukusaki, E., Yoneyama, K., Takeuchi, Y., and Kobayashi, A.:Cloning of a cryptochrome homologue from the holoparasitic plant Orobanche minor Sm. Plant Physiol Biochem, 43, 499-502(2005). [Pub Med]

61) Siddiqui, M.A., A. Yamanaka, K. Hirooka, T. Bamaba, A. Kobayashi, T. Imanaka, E. Fukusaki, and S. Fujiwara, "Enzymatic and structural characterization of type II isopentenyl diphosphate isomerase from hyperthermophilic archaeonThermococcus kodakaraensis." Biochem Biophys Res Commun, 331(4): 1127-36.(2005) [Pub Med]

60) Nakae, Y., E.i. Fukusaki, S.-i. Kajiyama, A. Kobayashi, and I. Sakata, "The Convenient Screening Method using Albumin for the Tumor Localizing Property of Ga-porphyr in Complexes." Journal of Photochemistry and PhotoBiology A: Chemistry, 172(1), 55-61.(2005) [Science Direct]

59) Nakae, Y., E.i. Fukusaki, S.-i. Kajiyama, A. Kobayashi, and I. Sakata, "Convenient Screening Methods for the Photosensitivity." Journal of Photochemistry and PhotoBiology A: Chemistry, 171(1): 91-95.(2005) [Science Direct]

58) Hirooka, K., Y. Izumi, C.I. An, Y. Nakazawa, E. Fukusaki, and A. Kobayashi, "Functional Analysis of Two Solanesyl Diphosphate Synthases from Arabidopsis thaliana." Biosci Biotechnol Biochem, 69(3): 592-601.(2005) [Pub Med]

57) An, C.I., A. Sawada, Y. Kawaguchi, E. Fukusaki, and A. Kobayashi, "Transient RNAi Induction against Endogenous Genes in Arabidopsis Protoplasts Using in Vitro-Prepared Double-Stranded RNA." Biosci Biotechnol Biochem, 69(2): 415-8.(2005) [Pub Med]

56) Fukusaki, E.i., K. Harada, T. Bamba, and A. Kobayashi, "An isotope effect on the comparative quantification of flavonoids by means of methylation-based stable isotope dilution coupled with capillary liquid chromatograph/mass spectrometry." J. Biosci. Bioeng., 99(1): 75-77.(2005) [Pub Med]

55) Dubouzet, J.G., T. Morishige, N. Fujii, C.I. An, E.I. Fukusaki, K. Ifuku, and F. Sato, "Transient RNA Silencing of Scoulerine 9-O-Methyltransferase Expression by Double Stranded RNA in Coptis japonica Protoplasts." Biosci Biotechnol Biochem, 69(1): 63-70.(2005) [Pub Med]

54) Trakulnaleamsai, C., Okazawa, A., An, C.I., Kajiyama, S., Fukusaki, E., Yoneyama, K., Takeuchi, Y., and Kobayashi, A.: Isolation and Characterization of a cDNA Encoding Phytochrome A in the Non-Photosynthetic Parasitic Plant, Orobanche minor Sm, Biosci Biotechnol Biochem, 69, 71-78 (2005). [Pub Med]

2004

53) Mekkriengkrai, D., T. Sando, K. Hirooka, J. Sakdapipanich, Y. Tanaka, E.I. Fukusaki, and A. Kobayashi, "Cloning and Characterization of Farnesyl Diphosphate Synthase from the Rubber-Producing Mushroom Lactarius chrysorrheus." Biosci Biotechnol Biochem, 68(11): 2360-2368.(2004) [Pub Med]

52) Fujiwara, S., A. Yamanaka, K. Hirooka, A. Kobayashi, T. Imanaka, and E. Fukusaki, "Temperature-dependent modulation of farnesyl diphosphate/geranylgeranyl diphosphate synthase from hyperthermophilic archaea." Biochem Biophys Res Commun, 325(3): 1066-74.(2004) [Pub Med]

51) Fukusaki, E., S. Takeno, T. Bamba, H. Okumoto, H. Katto, S. Kajiyama, and A. Kobayashi, "Biosynthetic pathway for the c45 polyprenol, solanesol, in tobacco." Biosci Biotechnol Biochem, 68(9): 1988-90.(2004) [Pub Med]

50) Hasunuma, T., E. Fukusaki, and A. Kobayashi, "Expression of fungal pectin methylesterase in transgenic tobacco leads to alteration in cell wall metabolism and a dwarf phenotype." J Biotechnol, 111(3): 241-51.(2004) [Pub Med]

49) Hasunuma, T., S. Kuwabata, E. Fukusaki, and A. Kobayashi, "Real-time quantification of methanol in plants using a hybrid alcohol oxidase-peroxidase biosensor." Anal Chem, 76(5): 1500-6.(2004) [Pub Med] 

48) Fukusaki, E., K. Kawasaki, S. Kajiyama, C.I. An, K. Suzuki, Y. Tanaka, and A. Kobayashi, "Flower color modulations of Torenia hybrida by downregulation of chalcone synthase genes with RNA interference." J Biotechnol, 111(3): 229-40.(2004) [Pub Med]

47) Fukusaki, E.-i., K. Ogawa, A. Okazawa, S.-i. Kajiyama, and A. Kobayashi, "A chitin-oligomer binding peptide obtained by screening of a phage display random peptide library and its affinity modulation corresponding to oxidation-reduction state." J. Mol. Cat. B, 28: 181-184.(2004) [Science Direct]

46) Bamba, T., E.-i. Fukusaki, Y. Nakazawa, and A. Kobayashi, "Rapid and high-resolution analysis of geometric polyprenol homologues by connected octadecylsilylated monolithic silica columns in high-performance liquid chromatography." J. Sep. Science, 27(4): 293-296.(2004) [Pub Med]

45) Tang, L., A. Okazawa, Y. Itoh, E.-i. Fukusaki, and A. Kobayashi, "Expression of chlorophyllase is not induced during autumnal yellowing in Ginkgo biloba." Z. Naturforsch [C], 59c: 415-420.(2004) [Pub Med]

2003

44) Marfori, E.C., S. Kajiyama, E. Fukusaki, and A. Kobayashi, "Phytotoxicity of the tetramic acid metabolite trichosetin."Phytochemistry, 62(5): 715 - 721.(2003) [Pub Med]

43 Kim, J.K., T. Shiraishi, E. Fukusaki, and A. Kobayashi, "Quantitation of formate by solid-phase microextraction and gas chromatography--mass spectrometry utilizing a [13C]formate internal standard." J Chromatogr A, 986(2): 313-7.(2003)[Pub Med]

42) Hirooka, K., T. Bamba, E.I. Fukusaki, and A. Kobayashi, "Cloning and kinetic characterization of Arabidopsis thaliana solanesyl diphosphate synthase." Biochem J, 370(Pt 2): 679-686.(2003) [Pub Med]

41) Hasunuma, T., E. Fukusaki, and A. Kobayashi, "Methanol production is enhanced by expression of an Aspergillus niger pectin methylesterase in tobacco cells." J Biotechnol, 106(1): 45-52.(2003) [Pub Med]

40) Fukusaki, E., T. Ikeda, D. Suzumura, and K. Akio, "A facile transformation of Arabidopsis thaliana using ceramic supported propagation system." J. Biosci. Bioeng., 96(5): 503-505.(2003) [Pub Med]

39) Fukusaki, E., T. Nishikawa, K. Kato, A. Shinmyo, H. Hemmi, T. Nishino, and A. Kobayashi, "Introduction of the archaeal geranylgeranyl pyrophosphate synthase gene into Chlamydomonas reinhardtii chloroplast." J. Biosci. Bioeng.,95(3): 283-287.(2003) [Pub Med]

38) Bamba, T., E. Fukusaki, Y. Nakazawa, H. Sato, K. Ute, T. Kitayama, and A. Kobayashi, "Analysis of long-chain polyprenols using supercritical fluid chromatography and matrix-assisted laser desorption ionization time-of-flight mass spectrometry." J Chromatogr A, 995(1-2): 203-7.(2003) [Pub Med]

37) An, C.-I., A. Sawada, E.-i. Fukusaki, and A. Kobayashi, "A transient RNAi assay system using Arabidopsis protoplasts." Biosci. Biotech. Biochem., 67(12): 2674-2677.(2003) [Pub Med]

2002

36) Sone, T., E. Nagamori, T. Ikeuchi, A. Mizukami, Y. Takakura, S. Kajiyama, E. Fukusaki, S. Harashima, A. Kobayashi, and K. Fukui,

"A Novel Gene Delivery System in Plants with Calcium Alginate Micro-Beads."

J. Biosci. Bioeng., 94(1): 87-91.(2002)

https://doi.org/10.1016/S1389-1723(02)80123-2

35) Shiraishi, T., Y. Kawamoto, T. Watanabe, E. Fukusaki, and A. Kobayashi,

"Methylamine Treatment Changes the Allocation of Carbohydrate to Roots in Rice Plants."

J. Biosci. Bioeng., 94(5): 460-466.(2002)

https://doi.org/10.1016/S1389-1723(02)80225-0

34) Marfori, E.C., T. Bamba, S. Kajiyama, E. Fukusaki, and A. Kobayashi,

"Biosynthetic studies of the tetramic acid antibiotic trichosetin."

Tetrahedron, 58: 6655-6658.(2002)

https://doi.org/10.1016/S0040-4020(02)00689-0

33) Marfori, E.C., S. Kajiyama, E. Fukusaki, and A. Kobayashi,

"Trichosetin, a novel tetramic acid antibiotic produced in dual culture of Trichoderma harzianum and Catharanthus roseus Callus."

Z Naturforsch [C], 57(5-6): 465-70.(2002)

https://doi.org/10.1515/znc-2002-5-611

32) Dasman, S. Kajiyama, H. Kawasaki, M. Yagi, T. Seki, E. Fukusaki, and A. Kobayashi,

"Paenibacillus glycanilyticussp. nov., a novel species that degrades heteropolysaccharide produced by the cyanobacterium Nostoc commune."

Int J Syst Evol Microbiol, 52(Pt 5): 1669-74.(2002)

https://doi.org/10.1099/00207713-52-5-1669

31) Dasman, S. Kajiyama, A. Okazawa, E. Fukusaki, and A. Kobayashi,

"Purification and properties of an enzyme capable of degrading the polysaccharide of the cyanobacterium, Nostoc commune."

Z Naturforsch [C], 57(11-12): 1042-6.(2002)

https://doi.org/10.1515/znc-2002-11-1215

30) Bamba, T., E. Fukusaki, Y. Nakazawa, and A. Kobayashi,

"In-situ chemical analyses of trans-polyisoprene by histochemical staining and Fourier transform infrared microspectroscopy in a rubber- producing plant, Eucommia ulmoidesOliver."

Planta, 215(6): 934-9.(2002)

https://doi.org/10.1007/s00425-002-0832-3

29) An, C.I., S. Takekawa, A. Okazawa, E. Fukusaki, and A. Kobayashi,

"Degradation of a peptide in pitcher fluid of the carnivorous plant Nepenthes alata Blanco."

Planta, 215(3): 472-7.(2002)

https://doi.org/10.1007/s00425-002-0768-7

28) An, C.-I., E. Fukusaki, and A. Kobayashi,

"Aspartic proteinases are expressed in pitchers of the carnivorous plant Nepenthes alata Blanco."

Planta, 214: 661-667.(2002)

https://doi.org/10.1007/s004250100665

2001

27) Fukusaki, E., T. Oishi, H. Tanaka, S. Kajiyama, and A. Kobayashi

"Identification of genes induced by taxol application using a combination of differential display RT-PCR and DNA microarray analysis."

Z Naturforsch [C], 56(9-10): 814-9.(2001)

https://doi.org/10.1515/znc-2001-9-1022

26) Fukusaki, E., T. Hasunuma, S. Kajiyama, A. Okazawa, T.J. Itoh, and A. Kobayashi

SELEX for Tubulin Affords Specific T-Rich DNA Aptamers.

Bioorg Med Chem Lett, 11(22): 2927-2930.(2001)

https://doi.org/10.1016/S0960-894X(01)00584-4

25) Fukusaki, E., T. Nakanishi, K. Ogawa, and A. Kobayashi

A screening of phage display library for a neutral saccharide, 'chitin' in a medium containing ethanol.

Electrochemistry, 69(12): 966-968.(2001)

https://doi.org/10.5796/electrochemistry.69.966

24) Bamba, T., E. Fukusaki, S. Kajiyama, K. Ute, T. Kitayama, and A. Kobayashi

High-resolution analysis of polyprenols by supercritical fluid chromatography.

J Chromatogr A, 911(1): 113-7.(2001)

https://doi.org/10.1016/S0021-9673(00)01250-4

23) Bamba, T., E. Fukusaki, S. Kajiyama, K. Ute, T. Kitayama, and A. Kobayashi

The occurrence of geometric polyprenol isomers in the rubber-producing plant, Eucommia ulmoides Oliver.

Lipids, 36(7): 727-32.(2001)

https://doi.org/10.1007/s11745-001-0778-5

22) An, C.I., E. Fukusaki, and A. Kobayashi

Plasma-membrane H+-ATPases are expressed in pitchers of the carnivorous plant Nepenthes alata Blanco.

Planta, 212(4): 547-55.(2001)

https://doi.org/10.1007/s004250000455

2000

21) Tang, L., A. Okazawa, E. Fukusaki, and A. Kobayashi

Removal of Magnesium by Mg-dechelatase Is a Major Step in the Chlorophyll-Degrading Pathway in Ginkgo biloba in the Process of Autumnal Tints.

Z. Naturforsch., 56: 923-926.(2000)

https://doi.org/10.1515/znc-2000-11-1213

20) Shiraishi, T., E. Fukusaki, and A. Kobayashi

Formate dehydrogenase in rice plant: Growth stimulation effects of formate in rice plant.

J. Biosci. Bioeng., 89: 241-236.(2000)

https://doi.org/10.1016/S1389-1723(00)88826-X

19) Shiraishi, T., E. Fukusaki, C. Miyake, A. Yokota, and A. Kobayashi

Formate protects photosynthetic machinery from photoinhibition.

J. Biosci. Bioeng., 89: 564-568.(2000)

https://doi.org/10.1016/S1389-1723(00)80058-4

18) Okazawa, A., H. Maeda, E. Fukusaki, and A. Kobayashi

In Vitro Selection of Hematoporphyrin Binding DNA Aptamers.

Bioorganic & Medicinal Chemistry Letters, 10: 2653-2656.(2000)

https://doi.org/10.1016/S0960-894X(00)00540-0

17) Fukusaki, E., T. Ikeda, T. Shiraishi, T. Nishikawa, and A. Kobayashi

Formate dehydrogenase gene of Arabidopsis thaliana is induced by formaldehyde and not by formic acid.

J. Biosci. Bioeng., 90: 691-693.(2000)

https://doi.org/10.1016/S1389-1723(00)90021-5

16) Fukusaki, E., A. Saigo, S. Kajiyama, and A. Kobayashi

An artificial plastic receptor that discriminates axial asymmetry.

J. Biosci. Bioeng., 90: 665-668.(2000)

https://doi.org/10.1016/S1389-1723(00)90014-8

15) Fukusaki, E., T. Kato, H. Maeda, N. Kawazoe, Y. Ito, A. Okazawa, S. Kajiyama, and A. Kobayashi

DNA aptamers that bind to chitin.

Bioorg Med Chem Lett, 10(5): 423-5.(2000)

https://doi.org/10.1016/S0960-894X(00)00013-5

1999

14) A simple assay for formate dehydrogenase activity by gas chromatography-mass spectrometry.

Shiraishi, T., E. Fukusaki, S. Kajiyama, and A. Kobayashi

J Chromatogr A, 855(1): 337-40.(1999)

https://doi.org/10.1016/S0021-9673(99)00653-6

13) Lipase-catalyzed kinetic resolution of 2,3-epoxy-1-tridecanol and its application to a facile synthesis of (+)-disparlure.

Fukusaki, E., S. Satoda, S. Senda, and T. Omata

J. Biosci. Bioeng., 87(1): 103-104.(1999)

https://doi.org/10.1016/S1389-1723(99)80016-4

1998

12) Lipase-catalyzed kinetic resolution of 4-hydroxy-5-dodecynonitrile and its application to a facile synthesis of chafer beetle sex pheromone.

Fukusaki, E., S. Satoda, S. Senda, and T. Omata

J. Ferment. Bioeng., 86(5): 508-509.(1998)

https://doi.org/10.1016/S0922-338X(98)80161-X

11) Synthesis of the four possible stereoisomers of 21 methyl-8-pentatriacontene, the female contact sex pheromone of the yellow-spotted longicorn beetle, Psacothea hilaris.

Fukusaki, E., S. Satoda, H. Yuasa, S. Senda, T. Omata, M. Fukaya, and S. Wakamura

J. Ferment. Bioeng., 85(1): 120-121.(1998)

https://doi.org/10.1016/S0922-338X(97)80366-2

1997

10) Sex Pheromonal Activity of Geometric and Optical Isomers of Synthetic Contact Pheromone to Males of the Yellow-Spotted Longicorn Beetle, Psacothea hilaris (PASCOE) (Coleoptera: Cerambycidae)

Midori FUKAYA, Sadao WAKAMURA, Tetsuya YASUDA, Shuji SENDA, Tetsuo OMATA, Eiichiro FUKUSAKI

Applied entomology and zoology 32 (4), 654-656 (1997)

https://doi.org/10.1303/aez.32.654

1993

9) Efficient kinetic resolution of organosilicon compounds by stereoselective esterification with hydrolases in organic solvent

Akinori Uejima, Toshiaki Fukui, Eiichiro Fukusaki, Tetsuo Omata, Takuo Kawamoto, Kenji Sonomoto, Atsuo Tanaka

Applied microbiology and biotechnology 38 (4), 482-486 (1993)

https://doi.org/10.1007/BF00242942

1992

8) Preparation of carboxyalkyl acrylate by lipase-catalyzed regioselective hydrolysis of corresponding methyl ester

E Fukusaki, S Senda, Y Nakazono, H Yuasa, T Omata

Bioorganic & medicinal chemistry letters 2 (5), 411-414 (1992)

https://doi.org/10.1016/S0960-894X(00)80158-4

7) Large-scale preparation of (+)-disparlure, the gypsy moth pheromone, by a practical chemico-enzymatic procedure

E Fukusaki, S Senda, Y Nakazono, H Yuasa, T Omata

Journal of fermentation and bioengineering 73 (4), 284-286 (1992)

https://doi.org/10.1016/0922-338X(92)90184-V

6) Lipase-catalyzed kinetic resolution of 2, 3-epoxy-8-methyl-1-nonanol, the key intermediate in the synthesis of the gypsy moth pheromone

E Fukusaki, S Senda, Y Nakazono, H Yuasa, T Omata

Journal of fermentation and bioengineering 73 (4), 280-283 (1992)

https://doi.org/10.1016/0922-338X(92)90183-U

5) Synthesis of the Enantiomers of (Z)-5 (1-Octenyl) oxacyclopentan-2-one, a Sex Pheromone of the Cupreous Chafer Beetle, Anomala cuprea Hope

E Fukusaki, S Senda, Y Nakazono, T Omata

Bioscience, biotechnology, and biochemistry 56 (7), 1160-1161 (1992)

https://doi.org/10.1271/bbb.56.1160

1991

4) Lipase-catalyzed kinetic resolution of methyl 4-hydroxy-5-tetradecynoate and its application to a facile synthesis of Japanese beetle pheromone

E Fukusaki, S Senda, Y Nakazono, T Omata

Tetrahedron 47 (32), 6223-6230 (1991)

https://doi.org/10.1016/S0040-4020(01)86554-6

1987

3) Structure and expression of genes coding for xylan‐degrading enzymes of Bacillus pumilus

Hideaki MORIYAMA, Eiichiro FUKUSAKI, Joaquin CABRERA CRESPO, Atsuhiko SHINMYO, Hirosuke OKADA

European journal of biochemistry 166 (3), 539-545 (1987)

https://doi.org/10.1111/j.1432-1033.1987.tb13547.x

1985

2) Expression of a xylanase gene of Bacillus pumilus in Escherichia coli and Bacillus subtilis

W Panbangred, E Fukusaki, EC Epifanio, A Shinmyo, H Okada

Applied microbiology and biotechnology 22 (4), 259-264 (1985)

https://doi.org/10.1007/BF00252027

1984

1) The complete nucleotide sequence of the xylanase gene (xynA) of Bacillus pumilus

E Fukusaki, W Panbangred, A Shinmyo, H Okada

FEBS letters 171 (2), 197-201 (1984)

https://doi.org/10.1016/0014-5793(84)80487-1